HHsearch alignment for GI: 254780810 and conserved domain: PRK06936
>PRK06936 type III secretion system ATPase; Provisional.
Probab=100.00 E-value=0 Score=609.04 Aligned_cols=323 Identities=20% Similarity=0.225 Sum_probs=304.9
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
T Consensus 62 EVVgf~~~~~~l~p~~~~~Gi~~G~~V~~~g~~~~vpvG~~lLGRV~D~~G~PlDg~~~~~~~~~~pi~~~~p~p~~R~~ 141 (439)
T PRK06936 62 EVIGFAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRL 141 (439)
T ss_pred EEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHCCC
T ss_conf 99988389899996778667899999997899867775704228888888875589999987876204588978420268
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
T Consensus 142 i~epl~TGIraID~llt~g~GQR~gIfagsGvGKs~Ll~~i~r~~~ad----v~V~alIGERgrEv~efie~~l~~~gl~ 217 (439)
T PRK06936 142 IETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD----VTVLALIGERGREVREFIESDLGEEGLR 217 (439)
T ss_pred CCCCCCCCCEEEECCCCHHCCCEEECCCCCCCCHHHHHHHHHHHHCCC----CEEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 787422685555246863105701023699998899999997643269----5799980730899999999864125431
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
T Consensus 218 rsvvV~atsd~p~~~R~~aa~~a~aiAEyFrd~G~~VLl~~DslTR~A~A~REI~l~~gepP~~~GYppsvf~~l~~l~E 297 (439)
T PRK06936 218 KAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLME 297 (439)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 06999618989989999999887788999985898489993567899999989998668999876779509988788887
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r 306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM 385 (423)
Q Consensus 306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~ 385 (423)
T Consensus 298 Rag~~~-~GSITa~~tVl~~-gdD~~dPi~d~~~silDGhivLsR~la~~g~yPAIDvl~S~SRvm~~v~~~~h~~~a~~ 375 (439)
T PRK06936 298 RAGQSD-KGSITALYTVLVE-GDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLASASRVMNQIVSKEHKTWAGR 375 (439)
T ss_pred HCCCCC-CCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHH
T ss_conf 255899-9745765445504-88777771565666626069984878866999981874045444521226999999999
Q ss_pred HHHHHHCCCCHHHHHHH
Q ss_conf 99996126937899999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l 402 (423)
T Consensus 376 ~r~~la~y~e~edli~i 392 (439)
T PRK06936 376 LRELLAKYEEVELLLQI 392 (439)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999989999999985