HHsearch alignment for GI: 254780810 and conserved domain: PRK07196
>PRK07196 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=586.33 Aligned_cols=324 Identities=23% Similarity=0.211 Sum_probs=301.5
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
T Consensus 55 EVVgf~~~~~~L~p~~~~~Gi~~G~~V~~~g~~~~v~vg~~lLGRVvD~~G~PlDg~g~~~~~~~~~~~~~~~nPl~R~~ 134 (434)
T PRK07196 55 QVVGFDRDITYLMPFKHPGGVLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRA 134 (434)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHHCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 99998199699998888778899999998899876776862247577678862689988888846556689998301378
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
T Consensus 135 i~e~l~TGIraID~l~pigrGQRigIfggsGvGKs~Ll~~I~r~~~ad----vvVi~lIGeRgrEv~efi~~~~~~~~l~ 210 (434)
T PRK07196 135 VDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD----VVVVGLIGERGREVKEFIEHSLQAAGMA 210 (434)
T ss_pred CCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----EEEEEECCEEHHHHHHHHHHHHHCCCCC
T ss_conf 887212686244155770245242101478997899999998973799----8999742223499999999874246743
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
T Consensus 211 ~svvv~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~svf~~l~~l~E 290 (434)
T PRK07196 211 KSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAE 290 (434)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 26999845889878888999889989999986798569995474688999999997568999867758438888589998
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r 306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM 385 (423)
Q Consensus 306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~ 385 (423)
T Consensus 291 RaG~~~~~GSITa~~tv~~~-~dD~~dpi~d~~~silDGhivLsr~la~~G~yPaIdvl~S~SR~m~~i~~~~~~~~a~~ 369 (434)
T PRK07196 291 SAGNSSGNGTMTAIYTVLAE-GDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASL 369 (434)
T ss_pred HHCCCCCCEEEEEEEEEECC-CCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHH
T ss_conf 52157886248888888626-88878870666575507549984768866999973886264225510166999999999
Q ss_pred HHHHHHCCCCHHHHHHH
Q ss_conf 99996126937899999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l 402 (423)
T Consensus 370 ~r~~la~y~e~e~li~~ 386 (434)
T PRK07196 370 LKQCYADYMAIKPLIPL 386 (434)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999985