HHsearch alignment for GI: 254780810 and conserved domain: PRK07960
>PRK07960 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=596.00 Aligned_cols=372 Identities=19% Similarity=0.192 Sum_probs=313.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCE-EEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEE---
Q ss_conf 8857666789999999875205874899999854047702-675045486666556046010000122125987999---
Q gi|254780810|r 27 ENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFG-FLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEG--- 102 (423)
Q Consensus 27 e~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyG-FLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g--- 102 (423)
T Consensus 20 ~~~~~~~~~GrV~~v~G~~iea~G~~a~iG~~C~I~~~~g~~~~~v~AEVVGF~~~~~~Lmp~~~~~Gi~~G~~V~~~~~ 99 (455)
T PRK07960 20 AQLPAVRRYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNI 99 (455)
T ss_pred HCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC
T ss_conf 36997614668999973599996778897998999707998777167999987699589964797665799999972467
Q ss_pred ----EEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf ----8862468887630002222556887885124430002000112234324778653213688899886551023122
Q gi|254780810|r 103 ----SIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSL 178 (423)
Q Consensus 103 ----~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~ 178 (423)
T Consensus 100 ~~~~~~~~~~vpVg~~lLGRVvd~lG~PlDg~~~~~~~~~~pi~~~~pnp~~R~~i~epL~TGIraID~llpigrGQRig 179 (455)
T PRK07960 100 SAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTTETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG 179 (455)
T ss_pred CCCCCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCEEE
T ss_conf 65557888872038463063518999826899999987615355899782211787872326844440336714787763
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 204877878999999999986118864699995087878999999840-------3427823667888899999999999
Q gi|254780810|r 179 IVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIA 251 (423)
Q Consensus 179 i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~ 251 (423)
T Consensus 180 IfagsGvGKs~Ll~~iar~~~ad----v~Vi~lIGERgrEv~efi~~~l~~~~~~rsvvv~atsd~~p~~r~~aa~~a~a 255 (455)
T PRK07960 180 LFAGSGVGKSVLLGMMARYTRAD----VIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATR 255 (455)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCC----EEEEEEECEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 24899884999999998860898----58997204062899999999751477421279984266684888878999999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCC-CCCCCCEEEEEEEECCCCC
Q ss_conf 99999977992899981638987762001366777677-752024665046875225777-7778500121120126765
Q gi|254780810|r 252 KAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNI-KEGGSLTIIGTALVDTGSR 329 (423)
Q Consensus 252 ~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~-~~~Gs~T~~~t~lvetg~~ 329 (423)
T Consensus 256 iAEyFrd~Gk~VLl~~DslTr~A~A~REi~l~~gepP~~~GYppsvf~~l~~L~ERaG~~~~~~GSITa~~tVl~~-gdD 334 (455)
T PRK07960 256 IAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTE-GDD 334 (455)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECC-CCC
T ss_conf 9999985587379997364788888888887637998655778306777378998504789998113788899636-888
Q ss_pred CCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 54138898852266078980878847999740533542210155199999999999999961269378999999
Q gi|254780810|r 330 MDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 330 ~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
T Consensus 335 ~~dPi~d~~~silDGhivLsr~la~~g~yPAIDvl~S~SR~m~~i~~~~h~~~a~~~r~~la~y~~~~dli~iG 408 (455)
T PRK07960 335 QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRTFKQLLSSFQRNRDLVSVG 408 (455)
T ss_pred CCCCCHHHHHHHEEEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67871676454212599982899967999970865047550400079999999999999999999999999861