HHsearch alignment for GI: 254780810 and conserved domain: PRK08472

>PRK08472 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00  E-value=0  Score=596.66  Aligned_cols=356  Identities=20%  Similarity=0.157  Sum_probs=320.6

Q ss_pred             HHHHHHHCCCEEEEEEE------E-EEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             99875205874899999------8-5404770267504548666655604601000012212598799988624688876
Q gi|254780810|r   41 ILKVLSGRDVEIIGEGV------I-EVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERY  113 (423)
Q Consensus        41 Il~~~~~~~g~~~~eGv------L-EIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~  113 (423)
T Consensus        20 yG~V~~V~G~li~v~G~~~~iGe~~~I~~~~~g~--~~~geVvg~~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~vpvg~   97 (435)
T PRK08472         20 FGSITKISANIIEARGLKPSVGDIVKIVEENDGK--ECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISDEGLNIPVGR   97 (435)
T ss_pred             CCEEEEEECEEEEEEECCCCCCCEEEEEECCCCC--EEEEEEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEECCC
T ss_conf             8689999573999994588767879999769996--77899998859989999836887899999999899973787583


Q ss_pred             CCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
Q ss_conf             30002222556887885124430002000112234324778653213688899886551023122204877878999999
Q gi|254780810|r  114 FALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQN  193 (423)
Q Consensus       114 ~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~  193 (423)
T Consensus        98 ~lLGRVvD~lG~PlDg~g~i~~~~~~pi~~~~~~p~~R~~i~epl~TGIraID~l~pigrGQR~gIf~g~GvGKt~Ll~~  177 (435)
T PRK08472         98 NLLGRVVDPLGRPIDGKGAIDYTEYAPIMRAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGM  177 (435)
T ss_pred             CCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf             40278877788645899998876230114789880451688874115855774326624776651235899983357888


Q ss_pred             HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             999986118864699995087878999999840------34278236678888999999999999999997799289998
Q gi|254780810|r  194 IAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILL  267 (423)
Q Consensus       194 ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~  267 (423)
T Consensus       178 i~~~~~~d----v~V~~lIGeR~rEv~efie~~~~~~l~~tvvvvatsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~  253 (435)
T PRK08472        178 IVKGCLAP----IKVVALIGERGREIPEFIEKNLGGDLSNTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIM  253 (435)
T ss_pred             HHHHHCCC----EEEEEEECEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             87761599----88997613122789999998741132225999846889989998888899999999986798489984


Q ss_pred             ECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             1638987762001366777677-752024665046875225777777850012112012676554138898852266078
Q gi|254780810|r  268 DSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEI  346 (423)
Q Consensus       268 DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i  346 (423)
T Consensus       254 Dsltr~A~A~REisl~~ge~P~~~gYp~~vf~~l~~l~ERag~~~~~GSIT~i~~v~~~-gdD~~~pi~d~~~si~DG~i  332 (435)
T PRK08472        254 DSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVE-GDDMSDPIADQSRSILDGHI  332 (435)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCEEE
T ss_conf             36278899999999865899975563835776657888864258898514888778504-88767774555545406079


Q ss_pred             EEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             980878847999740533542210155199999999999999961269378999999
Q gi|254780810|r  347 VLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLI  403 (423)
Q Consensus       347 ~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~  403 (423)
T Consensus       333 vLsr~La~~g~yPAIdvl~S~SR~~~~~~~~~h~~~a~~~r~~~a~y~e~e~li~ig  389 (435)
T PRK08472        333 VLSRELTDFGIYPPINILNSASRVMKDIISPEHNLWARKFKRLYSLLKENEVLIRIG  389 (435)
T ss_pred             EECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             997879866999984863145441400136999999999999999989899999964