HHsearch alignment for GI: 254780810 and conserved domain: PRK08472
>PRK08472 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=596.66 Aligned_cols=356 Identities=20% Similarity=0.157 Sum_probs=320.6
Q ss_pred HHHHHHHCCCEEEEEEE------E-EEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 99875205874899999------8-5404770267504548666655604601000012212598799988624688876
Q gi|254780810|r 41 ILKVLSGRDVEIIGEGV------I-EVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERY 113 (423)
Q Consensus 41 Il~~~~~~~g~~~~eGv------L-EIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~ 113 (423)
T Consensus 20 yG~V~~V~G~li~v~G~~~~iGe~~~I~~~~~g~--~~~geVvg~~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~vpvg~ 97 (435)
T PRK08472 20 FGSITKISANIIEARGLKPSVGDIVKIVEENDGK--ECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISDEGLNIPVGR 97 (435)
T ss_pred CCEEEEEECEEEEEEECCCCCCCEEEEEECCCCC--EEEEEEEEEECCEEEEEECCCCCCCCCCCEEEECCCCCEEECCC
T ss_conf 8689999573999994588767879999769996--77899998859989999836887899999999899973787583
Q ss_pred CCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
Q ss_conf 30002222556887885124430002000112234324778653213688899886551023122204877878999999
Q gi|254780810|r 114 FALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQN 193 (423)
Q Consensus 114 ~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ 193 (423)
T Consensus 98 ~lLGRVvD~lG~PlDg~g~i~~~~~~pi~~~~~~p~~R~~i~epl~TGIraID~l~pigrGQR~gIf~g~GvGKt~Ll~~ 177 (435)
T PRK08472 98 NLLGRVVDPLGRPIDGKGAIDYTEYAPIMRAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGM 177 (435)
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 40278877788645899998876230114789880451688874115855774326624776651235899983357888
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999986118864699995087878999999840------34278236678888999999999999999997799289998
Q gi|254780810|r 194 IAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILL 267 (423)
Q Consensus 194 ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~ 267 (423)
T Consensus 178 i~~~~~~d----v~V~~lIGeR~rEv~efie~~~~~~l~~tvvvvatsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~ 253 (435)
T PRK08472 178 IVKGCLAP----IKVVALIGERGREIPEFIEKNLGGDLSNTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIM 253 (435)
T ss_pred HHHHHCCC----EEEEEEECEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 87761599----88997613122789999998741132225999846889989998888899999999986798489984
Q ss_pred ECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 1638987762001366777677-752024665046875225777777850012112012676554138898852266078
Q gi|254780810|r 268 DSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEI 346 (423)
Q Consensus 268 DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i 346 (423)
T Consensus 254 Dsltr~A~A~REisl~~ge~P~~~gYp~~vf~~l~~l~ERag~~~~~GSIT~i~~v~~~-gdD~~~pi~d~~~si~DG~i 332 (435)
T PRK08472 254 DSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVE-GDDMSDPIADQSRSILDGHI 332 (435)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCEEE
T ss_conf 36278899999999865899975563835776657888864258898514888778504-88767774555545406079
Q ss_pred EEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 980878847999740533542210155199999999999999961269378999999
Q gi|254780810|r 347 VLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 347 ~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~ 403 (423)
T Consensus 333 vLsr~La~~g~yPAIdvl~S~SR~~~~~~~~~h~~~a~~~r~~~a~y~e~e~li~ig 389 (435)
T PRK08472 333 VLSRELTDFGIYPPINILNSASRVMKDIISPEHNLWARKFKRLYSLLKENEVLIRIG 389 (435)
T ss_pred EECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997879866999984863145441400136999999999999999989899999964