HHsearch alignment for GI: 254780810 and conserved domain: PRK08927

>PRK08927 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00  E-value=0  Score=596.35  Aligned_cols=326  Identities=22%  Similarity=0.204  Sum_probs=303.0

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHH-CCCCCCCCCCCCC
Q ss_conf             486666556046010000122125987999886246888763000222255688788512443000-2000112234324
Q gi|254780810|r   73 ANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDN-LTPLYPDKRFNME  151 (423)
Q Consensus        73 ~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~-l~p~~p~~~i~le  151 (423)
T Consensus        56 aEVvgf~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~lLGRVid~lG~PiDg~g~~~~~~~~~pi~~~~p~p~~R  135 (441)
T PRK08927         56 CEVIGFRGDRALLMPFGPLEGVRRGCRAVIANAAAQVRPSAAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSR  135 (441)
T ss_pred             EEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHC
T ss_conf             99998859879999888877889999999899998777786642878776711158999888876004024789684661


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-----
Q ss_conf             778653213688899886551023122204877878999999999986118864699995087878999999840-----
Q gi|254780810|r  152 LNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-----  226 (423)
Q Consensus       152 ~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-----  226 (423)
T Consensus       136 ~~i~e~L~TGIraID~l~pigrGQRigIfagsGvGKs~Ll~~i~r~~~ad----v~VialIGeRgrEv~efi~~~l~~~~  211 (441)
T PRK08927        136 ARVGPPLDLGVRALNTFLTCCRGQRLGIFAGSGVGKSVLLSMLARNTDAD----VSVIGLIGERGREVQEFLQDDLGPEG  211 (441)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC----CEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf             77776310360156533002036466631689998789999998641677----37875226518999999998720245


Q ss_pred             --CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHH
Q ss_conf             --342782366788889999999999999999977992899981638987762001366777677-75202466504687
Q gi|254780810|r  227 --QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRF  303 (423)
Q Consensus       227 --~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~  303 (423)
T Consensus       212 l~rsvvV~atsd~p~~~R~~a~~~A~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l  291 (441)
T PRK08927        212 LARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRL  291 (441)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf             22458999637898788799998755899999977996799834602888999999975589998778786178771788


Q ss_pred             HHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf             52257777778500121120126765541388988522660789808788479997405335422101551999999999
Q gi|254780810|r  304 FGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKV  383 (423)
Q Consensus       304 ~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~  383 (423)
T Consensus       292 ~ERag~~~~~GSIT~~~tVl~~-gdD~~dPi~d~~~~ilDGhIvLsr~La~~G~yPAIDvl~S~SR~~~~~~~~~h~~~a  370 (441)
T PRK08927        292 LERAGPGLGEGTITGLFTVLVD-GDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPAELPLV  370 (441)
T ss_pred             HHHHCCCCCCCEEECEEEEEEC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHH
T ss_conf             8761357899503030357612-787678724544656364799968798669999808762564424000279999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999961269378999999
Q gi|254780810|r  384 FMLRRIVSSMNSSDAIEFLI  403 (423)
Q Consensus       384 ~~~r~~l~~~~~~e~~~~l~  403 (423)
T Consensus       371 ~~~r~~la~y~e~edli~~G  390 (441)
T PRK08927        371 RRARQLMATYADMEELIRLG  390 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999888999999973