HHsearch alignment for GI: 254780810 and conserved domain: PRK08972
>PRK08972 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=597.03 Aligned_cols=325 Identities=20% Similarity=0.229 Sum_probs=304.1
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
T Consensus 60 EVvgf~~~~~~l~p~~~~~Gi~~G~~V~~tg~~~~VpVG~~lLGRVvD~lG~PiDg~g~~~~~~~~~i~~~~~~pl~R~~ 139 (440)
T PRK08972 60 EVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPVGMSLLGRVLDGNGNPLDGLGPIYTDQRAPRHSPPINPLSRRP 139 (440)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 99998299799998888888899999997899867884813118875788663589999999852131379978210377
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
T Consensus 140 i~epl~TGIkaID~l~pigrGQRigIf~gsGvGKS~Ll~~i~r~~~ad----vvVi~lIGERgrEv~efie~~l~~~~~~ 215 (440)
T PRK08972 140 ITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD----VIVVGLVGERGREVKEFIEEILGEEGRA 215 (440)
T ss_pred CCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCC----EEEEEEECEEHHHHHHHHHHHHCCCCCE
T ss_conf 786101583456343671246466631578975899998887514787----8999862313699999999985047744
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
T Consensus 216 rsvvV~atsd~~p~~R~~a~~~A~tiAEyFrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYppsvf~~l~~LlE 295 (440)
T PRK08972 216 RSVVVAAPADTSPLMRLKGCETATRIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVE 295 (440)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 78999704888868899999999988999996799779996355677788878998748998766776427777368887
Q ss_pred CCCCC-CCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf 25777-77785001211201267655413889885226607898087884799974053354221015519999999999
Q gi|254780810|r 306 AARNI-KEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVF 384 (423)
Q Consensus 306 ~ar~~-~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~ 384 (423)
T Consensus 296 Rag~~~~~~GSITa~~tVlv~-gdD~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRvm~~i~~~~h~~~a~ 374 (440)
T PRK08972 296 RAGNGGPGQGSITAFYTVLTE-GDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMR 374 (440)
T ss_pred HHCCCCCCCEEEEEEEEEECC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHH
T ss_conf 522689997658885666315-8866787245446553507998487986699987587506655274106899999999
Q ss_pred HHHHHHHCCCCHHHHHHHH
Q ss_conf 9999961269378999999
Q gi|254780810|r 385 MLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 385 ~~r~~l~~~~~~e~~~~l~ 403 (423)
T Consensus 375 ~~r~~la~y~e~~dli~~g 393 (440)
T PRK08972 375 RVKQVYSLYQQNRDLISIG 393 (440)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999888899999975