HHsearch alignment for GI: 254780810 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=94.16 E-value=0.085 Score=30.94 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=29.9
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 86551023122204877878999999999986118864
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPEC 205 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v 205 (423)
T Consensus 95 ~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v 132 (258)
T PRK09183 95 LSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKV 132 (258)
T ss_pred CCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 81665588679989999868999999999999879939