HHsearch alignment for GI: 254780810 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=98.60 E-value=1.6e-06 Score=61.97 Aligned_cols=250 Identities=14% Similarity=0.158 Sum_probs=145.5
Q ss_pred EEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEE---CCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4601000012212598799988624688876300022---2255688788512443000200011223432477865321
Q gi|254780810|r 83 YVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKV---NAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKD 159 (423)
Q Consensus 83 yVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV---~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~ 159 (423)
T Consensus 184 ~vaDGVI~L~~~~~~~~~~R~L~V~KmRGs~~~~g~h~f~It~~Gi~--------V~P-~~~~----~~~~-~~~~~rv~ 249 (501)
T PRK09302 184 FVSDCVVILRNVLEGEKRTRTLEILKYRGTTHGKGEYPFTITEDGIS--------VLP-LTAM----RLTQ-RSSNERIS 249 (501)
T ss_pred HHCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCEE--------EEE-CCHH----HCCC-CCCCCCCC
T ss_conf 20130788765414885258999998358866687233798799889--------980-3624----3356-66520004
Q ss_pred HHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---------CC
Q ss_conf 36888998865--51023122204877878999999999986118864699995087878999999840---------34
Q gi|254780810|r 160 ISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---------QG 228 (423)
Q Consensus 160 ~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---------~~ 228 (423)
T Consensus 250 tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~G--E~~l~~~FeE~~~~l~~~a~~~G~dl~~~~~~G 327 (501)
T PRK09302 250 SGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRG--ERCLLFAFEESRAQLVRNATSWGIDLEEMERKG 327 (501)
T ss_pred CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 797327887259975894699988999888999999999998659--908999996799999999997399848887489
Q ss_pred E--E-EECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHH
Q ss_conf 2--7-8236678888999999999999999997-7992899981638987762001366777677752024665046875
Q gi|254780810|r 229 E--V-ISSTFDESAARHVQVAEMVIAKAKCLVE-YGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFF 304 (423)
Q Consensus 229 ~--v-v~st~d~~~~~~~~~a~~a~~~a~~~~e-~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~ 304 (423)
T Consensus 328 ~l~i~~~~p~~~~~~e~~~~-------i~~~v~~~~~~-rVvIDsls~~~~~~~~~----------~~-r~~l~---~L- 384 (501)
T PRK09302 328 LLKIICARPESTGLEDHLQI-------IKREIEEFKPS-RVAVDPLSALARGGSLN----------EF-RQFVI---RL- 384 (501)
T ss_pred CEEEEEECCCCCCHHHHHHH-------HHHHHHHCCCC-EEEECCHHHHHHHCCHH----------HH-HHHHH---HH-
T ss_conf 47999837000598999999-------99999972998-99995806876526859----------99-99999---99-
Q ss_pred HCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCC-CCCCHHHC
Q ss_conf 22577777785001211201267655413889885226607898087884799974053354-22101551
Q gi|254780810|r 305 GAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS-GTRKEDLL 374 (423)
Q Consensus 305 ~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S-~sR~~~~l 374 (423)
T Consensus 385 --~~~Lk~-~gvT~l~t~~~~~~~g~~~~t~~~iS~l~D~ii~Lry~E~~g~l~R~i~VlK~R~s~h~~~i 452 (501)
T PRK09302 385 --TDYLKQ-EEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALNVLKMRGSWHSKQI 452 (501)
T ss_pred --HHHHHH-CCCEEEEEEECCCCCCCCCCCCCCHHHHCCEEEEEEEEEECCEEEEEEEEEEECCCCCCCCE
T ss_conf --999976-89789997612355676644766600111247899987138999898999993689657753