HHsearch alignment for GI: 254780810 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=97.79 E-value=0.00067 Score=44.78 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 32136888998865--5102312220487787899999999998611886469999508787899999984
Q gi|254780810|r 157 NKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS 225 (423)
Q Consensus 157 p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~ 225 (423)
T Consensus 5 Ri~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE-~~lyitl~E~~~~l~~~~~~ 74 (501)
T PRK09302 5 KLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGE-PGVFVTFEESPEDIIRNVAS 74 (501)
T ss_pred CCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHH
T ss_conf 21448711577854898899779998389999999999999999885599-78999857999999999998