HHsearch alignment for GI: 254780810 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=97.79  E-value=0.00067  Score=44.78  Aligned_cols=68  Identities=24%  Similarity=0.288  Sum_probs=51.5

Q ss_pred             CCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             32136888998865--5102312220487787899999999998611886469999508787899999984
Q gi|254780810|r  157 NKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS  225 (423)
Q Consensus       157 p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~  225 (423)
T Consensus         5 Ri~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE-~~lyitl~E~~~~l~~~~~~   74 (501)
T PRK09302          5 KLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGE-PGVFVTFEESPEDIIRNVAS   74 (501)
T ss_pred             CCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHH
T ss_conf             21448711577854898899779998389999999999999999885599-78999857999999999998