HHsearch alignment for GI: 254780810 and conserved domain: PRK09361
>PRK09361 radB DNA repair and recombination protein RadB; Provisional.
Probab=97.93 E-value=0.00013 Score=49.40 Aligned_cols=113 Identities=23% Similarity=0.265 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHHH-----
Q ss_conf 6532136888998865--51023122204877878999999999986118864699995087--87899999984-----
Q gi|254780810|r 155 PENKDISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE--RPEEVTDMQRS----- 225 (423)
Q Consensus 155 ~~p~~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE--r~~ev~e~~~~----- 225 (423)
T Consensus 2 ~erisTG~~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g~--~vlYi-dtE~~~~er~~qi~~~~~~~~ 78 (224)
T PRK09361 2 EELLPTGCKSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQGK--KVIYI-DTEGLSPERFKQIAGEDFEEL 78 (224)
T ss_pred CCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEE-CCCCCCHHHHHHHHCCCHHHH
T ss_conf 853037978999862699888879999899998599999999999997499--09996-787678899999856573454
Q ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 0342782366788889999999999999999977992899981638987762
Q gi|254780810|r 226 VQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAY 277 (423)
Q Consensus 226 ~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~ 277 (423)
T Consensus 79 ~~~i~~~~~~~~~~------~~~~i~~~~~~~~~~-~~lvVIDSi~~~~~~e 123 (224)
T PRK09361 79 LSNIIIFEPSSFEE------QREAIQKAEKIAKEN-VGLIVLDSATSLYRLE 123 (224)
T ss_pred HHCCEEECCCCHHH------HHHHHHHHHHHHHCC-CCEEEEECCHHHEEHH
T ss_conf 20614724798899------999999999875058-7389996230100000