HHsearch alignment for GI: 254780810 and conserved domain: PRK11642

>PRK11642 exoribonuclease R; Provisional.
Probab=95.81  E-value=0.15  Score=29.24  Aligned_cols=77  Identities=29%  Similarity=0.436  Sum_probs=49.5

Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEE--------------EEEEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf             999999838988576667899999998752058748--------------999998540477026750454866665560
Q gi|254780810|r   17 LLAFAESLEIENANVMRKQELMFSILKVLSGRDVEI--------------IGEGVIEVLQDGFGFLRSPDANYLAGPDDI   82 (423)
Q Consensus        17 L~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~--------------~~eGvLEIl~dGyGFLR~~~~~yl~~~~Di   82 (423)
T Consensus        37 ~~el~~~~~l~~~~---~~~~L~~~L~~l~~~g~l~~~r~~~y~~~~~~~lv~G~v~~~~~GfgFv~~e-----~~~eDi  108 (813)
T PRK11642         37 REELAVELNIEGEE---QLEALRRRLRAMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVE-----GRKDDL  108 (813)
T ss_pred             HHHHHHHCCCCCHH---HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC-----CCCCCE
T ss_conf             99999981999889---9999999999999689778748972367776785689999888877788707-----987770


Q ss_pred             EEECCCCCCCCCCCCCEEEEE
Q ss_conf             460100001221259879998
Q gi|254780810|r   83 YVSPSQIKSFSLKTGDTVEGS  103 (423)
Q Consensus        83 yVs~slir~f~Lr~GD~V~g~  103 (423)
T Consensus       109 fI~~~~l~~--a~~GDrVlvr  127 (813)
T PRK11642        109 YLSSEQMKT--CIHGDQVLAQ  127 (813)
T ss_pred             EECHHHHCC--CCCCCEEEEE
T ss_conf             008467432--6799999999