HHsearch alignment for GI: 254780810 and conserved domain: PRK11642
>PRK11642 exoribonuclease R; Provisional.
Probab=95.81 E-value=0.15 Score=29.24 Aligned_cols=77 Identities=29% Similarity=0.436 Sum_probs=49.5
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEE--------------EEEEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 999999838988576667899999998752058748--------------999998540477026750454866665560
Q gi|254780810|r 17 LLAFAESLEIENANVMRKQELMFSILKVLSGRDVEI--------------IGEGVIEVLQDGFGFLRSPDANYLAGPDDI 82 (423)
Q Consensus 17 L~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~--------------~~eGvLEIl~dGyGFLR~~~~~yl~~~~Di 82 (423)
T Consensus 37 ~~el~~~~~l~~~~---~~~~L~~~L~~l~~~g~l~~~r~~~y~~~~~~~lv~G~v~~~~~GfgFv~~e-----~~~eDi 108 (813)
T PRK11642 37 REELAVELNIEGEE---QLEALRRRLRAMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVE-----GRKDDL 108 (813)
T ss_pred HHHHHHHCCCCCHH---HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC-----CCCCCE
T ss_conf 99999981999889---9999999999999689778748972367776785689999888877788707-----987770
Q ss_pred EEECCCCCCCCCCCCCEEEEE
Q ss_conf 460100001221259879998
Q gi|254780810|r 83 YVSPSQIKSFSLKTGDTVEGS 103 (423)
Q Consensus 83 yVs~slir~f~Lr~GD~V~g~ 103 (423)
T Consensus 109 fI~~~~l~~--a~~GDrVlvr 127 (813)
T PRK11642 109 YLSSEQMKT--CIHGDQVLAQ 127 (813)
T ss_pred EECHHHHCC--CCCCCEEEEE
T ss_conf 008467432--6799999999