HHsearch alignment for GI: 254780810 and conserved domain: PRK12608
>PRK12608 transcription termination factor Rho; Provisional.
Probab=100.00 E-value=0 Score=934.87 Aligned_cols=378 Identities=61% Similarity=0.990 Sum_probs=373.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 99999987520587489999985404770267504548666655604601000012212598799988624688876300
Q gi|254780810|r 37 LMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFAL 116 (423)
Q Consensus 37 LI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L 116 (423)
T Consensus 1 lif~il~~~~~~~g~~~~eGvLEil~dGyGFLR~~~~nYlp~pdDiYVS~sqIrrf~LR~GD~V~G~iR~p~~ge---aL 77 (379)
T PRK12608 1 MTFTLEKPVVQDNGAEIGRGVLEILGKGFGFLRSPERNYLPSPDDVYVSPALIRRFGLRTGDLVEGVIRAPREKE---TL 77 (379)
T ss_pred CHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCCCCCCCCEEECHHHHHHCCCCCCCEEEEEECCCCCCH---HH
T ss_conf 947986998862995999999997589975835898788999988100999997549999998999863899874---20
Q ss_pred EEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 02222556887885124430002000112234324778653213688899886551023122204877878999999999
Q gi|254780810|r 117 LKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 117 ~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
T Consensus 78 ~~V~~VNg~~pe~~~~R~~F~~LTPi~P~erl~LE~~---~~~~s~RiiDL~aPIGkGQRgLIVAPPkaGKT~LLq~IA~ 154 (379)
T PRK12608 78 VRIDSVNGTDPEKLQRRKHFDDLTPLHPEERIVLETG---SDDLSMRVLDLVAPIGKGQRGLIVAPPRAGKTILLQQIAQ 154 (379)
T ss_pred EEEHHCCCCCHHHHCCCCCCCCCCCCCCCCEEECCCC---CCCCCCCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 4145238949899557467556877799650440148---8764411031004634574012745898657899999999
Q ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 98611886469999508787899999984034278236678888999999999999999997799289998163898776
Q gi|254780810|r 197 SIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRA 276 (423)
Q Consensus 197 ~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA 276 (423)
T Consensus 155 aI~~NhPev~livLLIDERPEEVTdm~r~v~gEVvaSTfD~~~~~h~~vAel~lerAkrlvE~G~dVvillDSiTRlaRA 234 (379)
T PRK12608 155 AVAANHPDIHLMVLLIDERPEEVTDMKRSVKGEVYASTFDRPYDRHIRVAELVLERAKRLVEEGKDVVILLDSLTRLARA 234 (379)
T ss_pred HHHHCCCCCEEEEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 99857998489999816893588888862370799977989989999999999999999987699689996517788998
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCC
Q ss_conf 20013667776777520246650468752257777778500121120126765541388988522660789808788479
Q gi|254780810|r 277 YNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKR 356 (423)
Q Consensus 277 ~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~ 356 (423)
T Consensus 235 yn~~~~~sGr~lsgg~d~~al~~pk~~Fgaar~ie~gGSlTiiaTaLveTgs~mD~~i~eefkgtgn~el~Ldr~la~~r 314 (379)
T PRK12608 235 YNSEVDSSGRTLSGGVDARALERPKRLFGAARKIEEGGSLTILATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKR 314 (379)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCC
T ss_conf 75336888861577869567500689853125777886632566663226664345889996326860899725577678
Q ss_pred CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9974053354221015519999999999999996126937899999998402899899998643
Q gi|254780810|r 357 IFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMN 420 (423)
Q Consensus 357 ~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~~n~e~l~~~~ 420 (423)
T Consensus 315 ~fPAIdi~~SgTR~EelLl~~~e~~~~~~lRr~l~~~~~~ea~e~l~~~l~~t~~N~efl~~~~ 378 (379)
T PRK12608 315 VFPAIDIAKSGTRREELLLDSKELEKVRLLRRALASLKPVEAMEKLLEKLRETPDNAEFLRSVQ 378 (379)
T ss_pred CCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 8751155457762266548999999999999986179979999999999864899999998639