HHsearch alignment for GI: 254780810 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=97.68  E-value=0.00054  Score=45.42  Aligned_cols=206  Identities=20%  Similarity=0.267  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf             889988655102312220487787899999999998611886469999-5087878999999840342782366788889
Q gi|254780810|r  163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISSTFDESAAR  241 (423)
Q Consensus       163 ~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~st~d~~~~~  241 (423)
T Consensus        41 ~~Lrr~i~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F-----~~lsAv~sg---vkdlr------------------   94 (726)
T PRK13341         41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF-----SSLNAVLAG---VKDLR------------------   94 (726)
T ss_pred             CHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-----EEEECCCCC---HHHHH------------------
T ss_conf             2899999769998278889799999999999988748867-----998562037---79999------------------


Q ss_pred             HHHHHHHHHHHHHH-HHHCCCCEEEEEECHHHHHHHHHCC------------CCCCCCCCCCCCCHHHHHHCHHH-----
Q ss_conf             99999999999999-9977992899981638987762001------------36677767775202466504687-----
Q gi|254780810|r  242 HVQVAEMVIAKAKC-LVEYGLDVVILLDSITRLCRAYNVL------------MPSSGKILTGGVDANALQRPKRF-----  303 (423)
Q Consensus       242 ~~~~a~~a~~~a~~-~~e~G~dVll~~DslTR~ArA~~~~------------~~~~g~~~~gg~~~~~l~~~~~~-----  303 (423)
T Consensus        95 ------~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L  168 (726)
T PRK13341         95 ------AEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLKSL  168 (726)
T ss_pred             ------HHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEECHHHHHHCEEEEECCC
T ss_conf             ------99999999987459965999862542588789987888606838999704789743642988832346674389


Q ss_pred             --------HHCCCCCCCCCC----CEEEE---EEEEC--CCC-CC----CCHHHHHHHHCCCCEEEEEHHHHHCCCCCCC
Q ss_conf             --------522577777785----00121---12012--676-55----4138898852266078980878847999740
Q gi|254780810|r  304 --------FGAARNIKEGGS----LTIIG---TALVD--TGS-RM----DEVIFEEFKGTGNSEIVLERKIADKRIFPAM  361 (423)
Q Consensus       304 --------~~~ar~~~~~Gs----~T~~~---t~lve--tg~-~~----d~~i~~~~~~~~d~~i~L~r~la~~~~~PAI  361 (423)
T Consensus       169 ~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~~~~~~------  242 (726)
T PRK13341        169 EDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINLAIAEE------  242 (726)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHH------
T ss_conf             99999999999987674325667877598999999997597399999999999970745768834435999999------


Q ss_pred             CCCCCCCCCHHHCC---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             53354221015519---999999999999996126937899999998402899
Q gi|254780810|r  362 DIIKSGTRKEDLLV---ERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKD  411 (423)
Q Consensus       362 d~~~S~sR~~~~l~---~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~~  411 (423)
T Consensus       243 ----~~~~~-~~~YDk~GD~HYd~iSAfiKSiRGSDpDAALywLARMLeaGED  290 (726)
T PRK13341        243 ----SIQQR-AVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGED  290 (726)
T ss_pred             ----HHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf             ----98566-6056877517889999999986548967899999999975998