HHsearch alignment for GI: 254780810 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=97.68 E-value=0.00054 Score=45.42 Aligned_cols=206 Identities=20% Similarity=0.267 Sum_probs=108.0
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf 889988655102312220487787899999999998611886469999-5087878999999840342782366788889
Q gi|254780810|r 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISSTFDESAAR 241 (423)
Q Consensus 163 ~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~st~d~~~~~ 241 (423)
T Consensus 41 ~~Lrr~i~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F-----~~lsAv~sg---vkdlr------------------ 94 (726)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF-----SSLNAVLAG---VKDLR------------------ 94 (726)
T ss_pred CHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-----EEEECCCCC---HHHHH------------------
T ss_conf 2899999769998278889799999999999988748867-----998562037---79999------------------
Q ss_pred HHHHHHHHHHHHHH-HHHCCCCEEEEEECHHHHHHHHHCC------------CCCCCCCCCCCCCHHHHHHCHHH-----
Q ss_conf 99999999999999-9977992899981638987762001------------36677767775202466504687-----
Q gi|254780810|r 242 HVQVAEMVIAKAKC-LVEYGLDVVILLDSITRLCRAYNVL------------MPSSGKILTGGVDANALQRPKRF----- 303 (423)
Q Consensus 242 ~~~~a~~a~~~a~~-~~e~G~dVll~~DslTR~ArA~~~~------------~~~~g~~~~gg~~~~~l~~~~~~----- 303 (423)
T Consensus 95 ------~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L 168 (726)
T PRK13341 95 ------AEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLKSL 168 (726)
T ss_pred ------HHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEECHHHHHHCEEEEECCC
T ss_conf ------99999999987459965999862542588789987888606838999704789743642988832346674389
Q ss_pred --------HHCCCCCCCCCC----CEEEE---EEEEC--CCC-CC----CCHHHHHHHHCCCCEEEEEHHHHHCCCCCCC
Q ss_conf --------522577777785----00121---12012--676-55----4138898852266078980878847999740
Q gi|254780810|r 304 --------FGAARNIKEGGS----LTIIG---TALVD--TGS-RM----DEVIFEEFKGTGNSEIVLERKIADKRIFPAM 361 (423)
Q Consensus 304 --------~~~ar~~~~~Gs----~T~~~---t~lve--tg~-~~----d~~i~~~~~~~~d~~i~L~r~la~~~~~PAI 361 (423)
T Consensus 169 ~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~~~~~~------ 242 (726)
T PRK13341 169 EDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINLAIAEE------ 242 (726)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHH------
T ss_conf 99999999999987674325667877598999999997597399999999999970745768834435999999------
Q ss_pred CCCCCCCCCHHHCC---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 53354221015519---999999999999996126937899999998402899
Q gi|254780810|r 362 DIIKSGTRKEDLLV---ERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKD 411 (423)
Q Consensus 362 d~~~S~sR~~~~l~---~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~~ 411 (423)
T Consensus 243 ----~~~~~-~~~YDk~GD~HYd~iSAfiKSiRGSDpDAALywLARMLeaGED 290 (726)
T PRK13341 243 ----SIQQR-AVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGED 290 (726)
T ss_pred ----HHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf ----98566-6056877517889999999986548967899999999975998