HHsearch alignment for GI: 254780810 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=97.50 E-value=0.0015 Score=42.54 Aligned_cols=207 Identities=17% Similarity=0.249 Sum_probs=104.6
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHH
Q ss_conf 88998865510231222048778789999999999861188646999950878789999998403427823667888899
Q gi|254780810|r 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARH 242 (423)
Q Consensus 163 ~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~ 242 (423)
T Consensus 26 ~~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~-----f~~-l--------------------nA~~~gv~d-- 77 (417)
T PRK13342 26 KPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAE-----FEA-L--------------------SAVTSGVKD-- 77 (417)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----EEE-E--------------------ECCCCCHHH--
T ss_conf 199999976999759988969998999999999986898-----899-6--------------------141038899--
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC------------CCCCCCCCCCCCHHHHHHCHHH-------
Q ss_conf 999999999999999779928999816389877620013------------6677767775202466504687-------
Q gi|254780810|r 243 VQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLM------------PSSGKILTGGVDANALQRPKRF------- 303 (423)
Q Consensus 243 ~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~------------~~~g~~~~gg~~~~~l~~~~~~------- 303 (423)
T Consensus 78 i---r~ii~~a~~~-~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~iiLIgATTENP~f~in~aLlSRc~vf~l~~L~~ 153 (417)
T PRK13342 78 L---REVIEEAKQS-RLGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSE 153 (417)
T ss_pred H---HHHHHHHHHH-HCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCHHHHHHHHHEECCCCCH
T ss_conf 9---9999998863-14896599997820058899999987511265699974157922534898985657002058999
Q ss_pred ------HHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEE--E---EEHH--HHHCCCCCCCCCCCCCCCC
Q ss_conf ------5225777777850012112012676554138898852266078--9---8087--8847999740533542210
Q gi|254780810|r 304 ------FGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEI--V---LERK--IADKRIFPAMDIIKSGTRK 370 (423)
Q Consensus 304 ------~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i--~---L~r~--la~~~~~PAId~~~S~sR~ 370 (423)
T Consensus 154 ~di~~iL~ral~~e~~~~~----------~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~~~ 223 (417)
T PRK13342 154 EDLEQLLKRALEDERGLGR----------KLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEALQR 223 (417)
T ss_pred HHHHHHHHHHHHHHHCCCC----------CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999999987743378----------877699999999981498599999999999852589973489999999844
Q ss_pred HHHCC---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 15519---999999999999996126937899999998402899
Q gi|254780810|r 371 EDLLV---ERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKD 411 (423)
Q Consensus 371 ~~~l~---~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~~ 411 (423)
T Consensus 224 ~~~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GED 267 (417)
T PRK13342 224 RAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGED 267 (417)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 10357778634789999999985169954899999999975999