HHsearch alignment for GI: 254780810 and conserved domain: PRK13343
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional.
Probab=100.00 E-value=0 Score=587.53 Aligned_cols=396 Identities=16% Similarity=0.128 Sum_probs=342.4
Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCEEECCC
Q ss_conf 98999999998389885766678999999987520587489999985404770267504548----66665560460100
Q gi|254780810|r 13 SPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIYVSPSQ 88 (423)
Q Consensus 13 ~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~DiyVs~sl 88 (423)
T Consensus 4 ~~~~~~~~~~~-~i~~~~~~~~---~~~~G~V~~v~dgi~~v~GL~~~~---~gel~~f~~~~~g~v~~l~~d~v~~v~l 76 (502)
T PRK13343 4 NSDSWLARIRQ-RIARYELAPD---AQEIGRVESVGDGIAFVSGLPDAA---LDELLRFDGGSRGFAFNLEEELVGAVLL 76 (502)
T ss_pred CHHHHHHHHHH-HHHCCCCCCC---EEEEEEEEEECCCEEEEECCCCCC---CCCEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf 98999999999-9962688772---367679999828679992674142---3888997899779999414983999995
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 00122125987999886246888763000222255688788512443000200011223432477865321368889988
Q gi|254780810|r 89 IKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLI 168 (423)
Q Consensus 89 ir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~ 168 (423)
T Consensus 77 g~~~~i~~G~~V~~TG~~l~VpVG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epL~TGIkaID~l 156 (502)
T PRK13343 77 DDTADLRAGTEVKRTGRVLEVPVGDALLGRVIDPLGRPLDGGGPLEATATRPIERPAPAIIERDSVTEPLQTGLKVIDAL 156 (502)
T ss_pred CCCCCCCCCCEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEECC
T ss_conf 59878899999996899548875731025873788344389999887643214688978332166675431260674055
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHH
Q ss_conf 6551023122204877878999999999986118864699995087878999999840-------342782366788889
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAAR 241 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~ 241 (423)
T Consensus 157 ~pigrGQR~gIfg~~GvGKT~L~~~~I--~nq~~~~vi~Vyv~IGer~~ev~~~v~~l~~~gal~~tvvV~ata~~p~~~ 234 (502)
T PRK13343 157 IPIGRGQRELIIGDRQTGKTAIAIDAI--INQKDKDVICVYVAIGQKASTVARVIDTLREHGALEYTTVVVAEASDPPGL 234 (502)
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHHHH--HHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHCCCCHHHEEEECCCCCCHHH
T ss_conf 664678577513678888048999999--972578874999996045165989999987648513122452377898688
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCC---CCCCCCE
Q ss_conf 999999999999999977992899981638987762001366777677-752024665046875225777---7778500
Q gi|254780810|r 242 HVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNI---KEGGSLT 317 (423)
Q Consensus 242 ~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~---~~~Gs~T 317 (423)
T Consensus 235 r~~ap~~a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~~srLlERa~~~~~~~ggGSIT 314 (502)
T PRK13343 235 QYLAPFAGCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERATKLSPELGGGSLT 314 (502)
T ss_pred HHHHHHHHCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 75556652025799996699679999566899999989999748998766769458877268998887526889984664
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 12112012676554138898852266078980878847999740533542210155199999999999999961269378
Q gi|254780810|r 318 IIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSD 397 (423)
Q Consensus 318 ~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e 397 (423)
T Consensus 315 alp~V~~~-~dDis~pIp~~v~sItDGqIvLsr~La~~G~~PAIdv~~SvSRVg~~aq~~~~k~va~~lr~~laqy~el~ 393 (502)
T PRK13343 315 ALPIIETQ-AGDLAAYIPTNLISITDGQIFLDSDLFASGQRPAVDVGKSVSRVGGKAQHPAIRKESGRLRLDYAQFLELE 393 (502)
T ss_pred EEEEEECC-CCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51699724-88756634565652226169972453226837851787761356857788999999999999999899999
Q ss_pred HHHHHHHH--------HHCCCCHHHHHHH
Q ss_conf 99999998--------4028998999986
Q gi|254780810|r 398 AIEFLIDK--------LKQTKDNKDFFYS 418 (423)
Q Consensus 398 ~~~~l~~~--------~~~~~~n~e~l~~ 418 (423)
T Consensus 394 ~f~~fg~~ld~~~~~~l~rg~r~~~~lkQ 422 (502)
T PRK13343 394 AFTRFGARLDAGTRKQITRGRRLRELLKQ 422 (502)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99987435899999999999999998578