HHsearch alignment for GI: 254780810 and conserved domain: PRK13343

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional.
Probab=100.00  E-value=0  Score=587.53  Aligned_cols=396  Identities=16%  Similarity=0.128  Sum_probs=342.4

Q ss_pred             CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCEEECCC
Q ss_conf             98999999998389885766678999999987520587489999985404770267504548----66665560460100
Q gi|254780810|r   13 SPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIYVSPSQ   88 (423)
Q Consensus        13 ~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~DiyVs~sl   88 (423)
T Consensus         4 ~~~~~~~~~~~-~i~~~~~~~~---~~~~G~V~~v~dgi~~v~GL~~~~---~gel~~f~~~~~g~v~~l~~d~v~~v~l   76 (502)
T PRK13343          4 NSDSWLARIRQ-RIARYELAPD---AQEIGRVESVGDGIAFVSGLPDAA---LDELLRFDGGSRGFAFNLEEELVGAVLL   76 (502)
T ss_pred             CHHHHHHHHHH-HHHCCCCCCC---EEEEEEEEEECCCEEEEECCCCCC---CCCEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf             98999999999-9962688772---367679999828679992674142---3888997899779999414983999995


Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             00122125987999886246888763000222255688788512443000200011223432477865321368889988
Q gi|254780810|r   89 IKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLI  168 (423)
Q Consensus        89 ir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~  168 (423)
T Consensus        77 g~~~~i~~G~~V~~TG~~l~VpVG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epL~TGIkaID~l  156 (502)
T PRK13343         77 DDTADLRAGTEVKRTGRVLEVPVGDALLGRVIDPLGRPLDGGGPLEATATRPIERPAPAIIERDSVTEPLQTGLKVIDAL  156 (502)
T ss_pred             CCCCCCCCCCEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEECC
T ss_conf             59878899999996899548875731025873788344389999887643214688978332166675431260674055


Q ss_pred             HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHH
Q ss_conf             6551023122204877878999999999986118864699995087878999999840-------342782366788889
Q gi|254780810|r  169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAAR  241 (423)
Q Consensus       169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~  241 (423)
T Consensus       157 ~pigrGQR~gIfg~~GvGKT~L~~~~I--~nq~~~~vi~Vyv~IGer~~ev~~~v~~l~~~gal~~tvvV~ata~~p~~~  234 (502)
T PRK13343        157 IPIGRGQRELIIGDRQTGKTAIAIDAI--INQKDKDVICVYVAIGQKASTVARVIDTLREHGALEYTTVVVAEASDPPGL  234 (502)
T ss_pred             CCCCCCCEEECCCCCCCCCCHHHHHHH--HHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHCCCCHHHEEEECCCCCCHHH
T ss_conf             664678577513678888048999999--972578874999996045165989999987648513122452377898688


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCC---CCCCCCE
Q ss_conf             999999999999999977992899981638987762001366777677-752024665046875225777---7778500
Q gi|254780810|r  242 HVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNI---KEGGSLT  317 (423)
Q Consensus       242 ~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~---~~~Gs~T  317 (423)
T Consensus       235 r~~ap~~a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~~srLlERa~~~~~~~ggGSIT  314 (502)
T PRK13343        235 QYLAPFAGCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERATKLSPELGGGSLT  314 (502)
T ss_pred             HHHHHHHHCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             75556652025799996699679999566899999989999748998766769458877268998887526889984664


Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             12112012676554138898852266078980878847999740533542210155199999999999999961269378
Q gi|254780810|r  318 IIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSD  397 (423)
Q Consensus       318 ~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e  397 (423)
T Consensus       315 alp~V~~~-~dDis~pIp~~v~sItDGqIvLsr~La~~G~~PAIdv~~SvSRVg~~aq~~~~k~va~~lr~~laqy~el~  393 (502)
T PRK13343        315 ALPIIETQ-AGDLAAYIPTNLISITDGQIFLDSDLFASGQRPAVDVGKSVSRVGGKAQHPAIRKESGRLRLDYAQFLELE  393 (502)
T ss_pred             EEEEEECC-CCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             51699724-88756634565652226169972453226837851787761356857788999999999999999899999


Q ss_pred             HHHHHHHH--------HHCCCCHHHHHHH
Q ss_conf             99999998--------4028998999986
Q gi|254780810|r  398 AIEFLIDK--------LKQTKDNKDFFYS  418 (423)
Q Consensus       398 ~~~~l~~~--------~~~~~~n~e~l~~  418 (423)
T Consensus       394 ~f~~fg~~ld~~~~~~l~rg~r~~~~lkQ  422 (502)
T PRK13343        394 AFTRFGARLDAGTRKQITRGRRLRELLKQ  422 (502)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             99987435899999999999999998578