HHsearch alignment for GI: 254780810 and conserved domain: TIGR00767
>TIGR00767 rho transcription termination factor Rho; InterPro: IPR004665 Members of this family have a related but highly variable long, highly charged insert near the amino end. The proteins differ in the specificity of RNA binding.; GO: 0003715 transcription termination factor activity, 0005524 ATP binding, 0006353 transcription termination.
Probab=100.00 E-value=0 Score=618.12 Aligned_cols=418 Identities=65% Similarity=1.039 Sum_probs=411.0
Q ss_pred CCHHHHHCCCHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf 4879997099899999999838988--57666789999999875205874899999854047702675045486666556
Q gi|254780810|r 4 MKLQELKNKSPTKLLAFAESLEIEN--ANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDANYLAGPDD 81 (423)
Q Consensus 4 m~l~eL~~~~l~EL~eiAkelgIe~--~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~D 81 (423)
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~g~~~~~~~~~~~~~~d 80 (420)
T TIGR00767 1 LSLEELKNKPLEELRKLAEELGLENEDLSGLKKSELIFAILKAHAEQGGLLFGEGVLEVLPDGYGFLRSPDNNYLPGPDD 80 (420)
T ss_pred CCHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 95134442016899999876043201333444678999999853201551110002533115420000465445677553
Q ss_pred CEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 04601000012212598799988624688876300022225568878851244300020001122343247786532136
Q gi|254780810|r 82 IYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDIS 161 (423)
Q Consensus 82 iyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~ 161 (423)
T Consensus 81 ~~~~p~~~~~~~~~~gd~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pl~p~~~~~~~~~~~~~~~~~ 160 (420)
T TIGR00767 81 IYVSPSQIRRFGLRTGDTVEGKIRSPKEGEKYFALLKVESVNGDDPDKAKERPLFDNLTPLYPNERLKLERGNTDPEDLS 160 (420)
T ss_pred CEECHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHHEECCCCCCCHHHH
T ss_conf 01147677652044575133110176322112110011002676501233202333345445410210014677511467
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHH
Q ss_conf 88899886551023122204877878999999999986118864699995087878999999840342782366788889
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAAR 241 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~ 241 (423)
T Consensus 161 ~~~~~~~~p~g~g~~~l~~~pp~~g~~~~~~~~~~~~~~~~p~~~l~~~l~d~~p~~~~~~~~~~~g~~~~~~~d~~~~~ 240 (420)
T TIGR00767 161 TRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIANAITRNHPEVELIVLLIDERPEEVTDLQRSVKGEVVASTFDEPPSR 240 (420)
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 78887651036775303651775442688888887763268743799886336622567777764212321001344101
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 99999999999999997799289998163898776200136677767775202466504687522577777785001211
Q gi|254780810|r 242 HVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGT 321 (423)
Q Consensus 242 ~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t 321 (423)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~p~~g~~l~gg~~~~~~~~p~~~~g~~~~~~~gg~l~~~~~ 320 (420)
T TIGR00767 241 HVQVAELVLEKAKRLVEHKKDVVILLDSITRLARAYNTVTPPSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIAT 320 (420)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCHHHHHHHCCCCCCCCEEEEEH
T ss_conf 24688999998888763256347740235676665410366666322156450120141455300102246652222100
Q ss_pred EEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 20126765541388988522660789808788479997405335422101551999999999999999612693789999
Q gi|254780810|r 322 ALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEF 401 (423)
Q Consensus 322 ~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~ 401 (423)
T Consensus 321 ~~~~~g~~~d~~~~~~~~g~g~~~~~l~~~~~~~~~~p~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (420)
T TIGR00767 321 ALVDTGSRMDEVIFEEFKGTGNLELHLDRKLADRRLFPAIDIKKSGTRKEELLLSPEELQKLWLLRKVLSPLDDVEALEL 400 (420)
T ss_pred HHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 12313651013444432277750111001333211022101234565212320377888899999887404450578999
Q ss_pred HHHHHHCCCCHHHHHHHHHC
Q ss_conf 99984028998999986430
Q gi|254780810|r 402 LIDKLKQTKDNKDFFYSMNK 421 (423)
Q Consensus 402 l~~~~~~~~~n~e~l~~~~k 421 (423)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~ 420 (420)
T TIGR00767 401 LLEKLKKTKTNEEFLELLNE 420 (420)
T ss_pred HHHHHHHCCCHHHHHHHHCC
T ss_conf 99987511323689997519