HHsearch alignment for GI: 254780810 and conserved domain: TIGR01026
>TIGR01026 fliI_yscN ATPase FliI/YscN family; InterPro: IPR005714 Proteins in this entry show extensive homology to the ATP synthase F1 beta subunit, and are involved in type III protein secretion. They fall into the two separate functional groups outlined below. The first group, exemplified by the Salmonella typhimurium FliI protein (P26465 from SWISSPROT), is needed for flagellar assembly. Most structural components of the bacterial flagellum are translocated through the central channel of the growing flagellar structure by the type III flagellar protein-export apparatus in an ATPase-driven manner, to be assembled at the growing end. FliI is the ATPase that couples ATP hydrolysis to the translocation reaction , . The second group couples ATP hydrolysis to protein translocation in non-flagellar type III secretion systems. Often these systems are involved in virulence and pathogenicity. YscN (P40290 from SWISSPROT) from pathogenic Yersinia species, for example, energises the injection of antihost factors directly into eukaryotic cells, thus overcoming host defences .; GO: 0016887 ATPase activity, 0009058 biosynthetic process, 0015031 protein transport, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=733.08 Aligned_cols=371 Identities=22% Similarity=0.211 Sum_probs=326.0
Q ss_pred HHHHHHHHHCCCEEEEEEEEEEEC-CCCE--EEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEE----EECCCC-
Q ss_conf 999987520587489999985404-7702--67504548666655604601000012212598799988----624688-
Q gi|254780810|r 39 FSILKVLSGRDVEIIGEGVIEVLQ-DGFG--FLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSI----RAPREG- 110 (423)
Q Consensus 39 ~~Il~~~~~~~g~~~~eGvLEIl~-dGyG--FLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~----r~~~~~- 110 (423)
T Consensus 28 ~~v~Gl~~ea~gp~~~vG~~c~I~~~g~~~~~~~---~EVVGf~~~~v~LmPy~~~~G~~~G~~V~~~~isae~~L~~~q 104 (455)
T TIGR01026 28 TKVKGLLIEAVGPQASVGDLCLIERKGSEGKEVV---AEVVGFNGEKVLLMPYEEVEGVEPGSKVLAKNISAEEGLSIKQ 104 (455)
T ss_pred EEEEEEEEEEECCCCCCCCEEEEEEECCCCCEEE---EEEEEEECCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 9985268985247766777789997378987799---9988520675675236544433534523320433002545574
Q ss_pred --CCCCCCEEECCCCCCCHHHHHC-CCCHHHCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf --8763000222255688788512-44300020--001122343247786532136888998865510231222048778
Q gi|254780810|r 111 --ERYFALLKVNAINFDVPERVRN-KIHFDNLT--PLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRT 185 (423)
Q Consensus 111 --~~~~~L~rV~~vnG~~~d~~~~-~~~f~~l~--p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~ 185 (423)
T Consensus 105 lP~G~~LLGRVld~~G~PiD~~~~~~~~~~~~~~~l~~~~~nPl~R~~i~~~~~tGVR~iD~LLTvGkGQR~GIFAGSGV 184 (455)
T TIGR01026 105 LPVGDGLLGRVLDGLGKPIDGKGKGFLDNVETEPALITAPINPLKREPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGV 184 (455)
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCEEECCCCCCCCCCCEEEEECCCC
T ss_conf 33687640244854687113777766654301255246898866763000210036453101035556650135503760
Q ss_pred CHHHHHHHHHH-HHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999-986118864699995087878999999840-------3427823667888899999999999999999
Q gi|254780810|r 186 GKTILLQNIAH-SIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLV 257 (423)
Q Consensus 186 gkt~ll~~ia~-~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~ 257 (423)
T Consensus 185 GKStLlGMIARn~~~AD----v~ViALIGERGREV~EFIE~~LG~EGLkrSV~VVaTSD~SPl~R~~GAy~At~iAEYFr 260 (455)
T TIGR01026 185 GKSTLLGMIARNNTEAD----VNVIALIGERGREVKEFIEKDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFR 260 (455)
T ss_pred CHHHHHHHHHHCCCCCC----EEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHEEHHHHHHHH
T ss_conf 03445667630067898----27998643777741578863136566601179983688638888732640025435465
Q ss_pred HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC-CCCCC-CCEEEEEEEECCCCCC-CCH
Q ss_conf 77992899981638987762001366777677-75202466504687522577-77778-5001211201267655-413
Q gi|254780810|r 258 EYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN-IKEGG-SLTIIGTALVDTGSRM-DEV 333 (423)
Q Consensus 258 e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~-~~~~G-s~T~~~t~lvetg~~~-d~~ 333 (423)
T Consensus 261 dqGk~VlLlmDSvTRfA~AqREiGLA~GEPP~~kGYtPSVF~~LP~LlERaG~G~~~~GGSITAFYTVLVe-GDD~s~eP 339 (455)
T TIGR01026 261 DQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSLLPRLLERAGKGASGKGGSITAFYTVLVE-GDDLSNEP 339 (455)
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEC-CCCCCCCC
T ss_conf 21870562020278998898899874377777777785488998999976068735779579888888641-56788777
Q ss_pred HHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--C
Q ss_conf 88988522660789808788479997405335422101551999999999999999612693789999999840289--9
Q gi|254780810|r 334 IFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTK--D 411 (423)
Q Consensus 334 i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~--~ 411 (423)
T Consensus 340 iAD~~r~ILDGHIVLSR~LA~~g~YPAIdvl~S~SR~~~~i~s~~~~~~~~~fR~lLs~y~~~E---dLi-riG~Y~~GS 415 (455)
T TIGR01026 340 IADSVRGILDGHIVLSRALADRGHYPAIDVLASISRLMTAIVSEEHKKAARKFRELLSKYKENE---DLI-RIGAYKKGS 415 (455)
T ss_pred CCCCCCEEECCCEEECHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHH-HHCCCCCCC
T ss_conf 2431022551535524588617897863755568898874074889999999999999887613---231-220255878
Q ss_pred HHHHHHHHHC
Q ss_conf 8999986430
Q gi|254780810|r 412 NKDFFYSMNK 421 (423)
Q Consensus 412 n~e~l~~~~k 421 (423)
T Consensus 416 d~e~D~AI~~ 425 (455)
T TIGR01026 416 DKELDKAIAK 425 (455)
T ss_pred CHHHHHHHHH
T ss_conf 8668999857