HHsearch alignment for GI: 254780810 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=94.17 E-value=0.046 Score=32.68 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=41.3
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC---CCEEEEEECCCCHHHHHHHHHHHCCE
Q ss_conf 98865510231222048778789999999999861188---64699995087878999999840342
Q gi|254780810|r 166 DLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHP---ECYLIVLLIDERPEEVTDMQRSVQGE 229 (423)
Q Consensus 166 d~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~---~v~~i~~ligEr~~ev~e~~~~~~~~ 229 (423)
T Consensus 234 ~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~ 300 (753)
T TIGR01447 234 VAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKA 300 (753)
T ss_pred HHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 9999986087689987988977899999999999989864997404788668447999999999988