HHsearch alignment for GI: 254780810 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=92.83 E-value=0.069 Score=31.56 Aligned_cols=156 Identities=21% Similarity=0.359 Sum_probs=78.5
Q ss_pred CCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 46888763000222255688788512443000200011223432477865321368889988655102312220487787
Q gi|254780810|r 107 PREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTG 186 (423)
Q Consensus 107 ~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~g 186 (423)
T Consensus 312 m~LP~P~G-~L~vE~v~~~PP~~~~------WsqPivPk~--~l------------~--gi~F~~~aGe~laIIGPSgSG 368 (556)
T TIGR01842 312 MALPEPEG-HLSVENVTIVPPGGKK------WSQPIVPKP--TL------------R--GISFAIQAGEALAIIGPSGSG 368 (556)
T ss_pred CCCCCCCC-EEEEEEEEEECCCCCC------CCCCCCCHH--HH------------C--CCCEEECCCCEEEEECCCCCC
T ss_conf 57889863-6888776510786313------578977614--22------------7--862156377458887478652
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC----------EEE-------ECCCCCCHH-HH-HHHHH
Q ss_conf 899999999998611886469999508787899999984034----------278-------236678888-99-99999
Q gi|254780810|r 187 KTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQG----------EVI-------SSTFDESAA-RH-VQVAE 247 (423)
Q Consensus 187 kt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~----------~vv-------~st~d~~~~-~~-~~~a~ 247 (423)
T Consensus 369 KStLaR~~vG~W~~~~G~VRL-----D--Gadl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~en~d~~~iieAAk 441 (556)
T TIGR01842 369 KSTLARILVGIWPPASGSVRL-----D--GADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGENADPEKIIEAAK 441 (556)
T ss_pred HHHHHHHHHHCCCCCCCCEEE-----E--HHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 588987887210135653364-----0--334402375365880154798505076767640244688788789999997
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCC
Q ss_conf 9999999999779928999816389877620013667776777520246650468752257
Q gi|254780810|r 248 MVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAAR 308 (423)
Q Consensus 248 ~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar 308 (423)
T Consensus 442 lA----------GvHEl-----Il~lP~GYDT~iG~~G~~LSGGQRQR-IaLARAlyG~P~ 486 (556)
T TIGR01842 442 LA----------GVHEL-----ILRLPDGYDTDIGEGGATLSGGQRQR-IALARALYGDPK 486 (556)
T ss_pred HH----------CHHHH-----HHCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHCCCE
T ss_conf 60----------30357-----51696885443137777786146899-999998717983