HHsearch alignment for GI: 254780810 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=94.98 E-value=0.012 Score=36.51 Aligned_cols=151 Identities=22% Similarity=0.261 Sum_probs=79.6
Q ss_pred CCEEECCCCCCCHHHHH--CCC--CHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf 00022225568878851--244--30002000112234324778653213688899886551023122204877878999
Q gi|254780810|r 115 ALLKVNAINFDVPERVR--NKI--HFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTIL 190 (423)
Q Consensus 115 ~L~rV~~vnG~~~d~~~--~~~--~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~l 190 (423)
T Consensus 434 a~~RlGDiLn~P~E~~~d~g~aalP~l~G~i~F~nirFRY~pD--~P----eVL~nl~L~I~~Ge~IGIvGpSGSGKSTL 507 (703)
T TIGR01846 434 AIERLGDILNSPTEPSSDAGLAALPELKGSITFENIRFRYKPD--SP----EVLSNLSLDIKPGEVIGIVGPSGSGKSTL 507 (703)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--CC----HHHHCCCCCCCCCEEEEEECCCCCCHHHH
T ss_conf 6531210058684889998730354225726787533146888--71----78732687657865799872789867899
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHH-----------------HHHHHCCEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999861188646999950878789999-----------------99840342782366788889999999999999
Q gi|254780810|r 191 LQNIAHSIKKNHPECYLIVLLIDERPEEVTD-----------------MQRSVQGEVISSTFDESAARHVQVAEMVIAKA 253 (423)
Q Consensus 191 l~~ia~~~~~~~~~v~~i~~ligEr~~ev~e-----------------~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a 253 (423)
T Consensus 508 TKL~QR---LYtP~~Gq--VLVDG~DLA~~DP~wLRRQ~gVVLQEn~LFsrSirdNI~l~~P~~~~E~Vi~AA~LAGA~- 581 (703)
T TIGR01846 508 TKLLQR---LYTPEHGQ--VLVDGVDLAIADPAWLRRQVGVVLQENVLFSRSIRDNIALCNPGASVEHVIAAAKLAGAH- 581 (703)
T ss_pred HHHHHH---HCCCCCCE--EEECCCCCCCCCCCHHHHCCEEEEECCHHHCCCHHHHHHHCCCCCCHHHHHHHHHHCCHH-
T ss_conf 999886---14888874--777030001018520102230234000210122788985177776989999998621858-
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99997799289998163898776200136677767775
Q gi|254780810|r 254 KCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGG 291 (423)
Q Consensus 254 ~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg 291 (423)
T Consensus 582 --------------dFI~~Lp~GY~T~vgE~G~~LSGG 605 (703)
T TIGR01846 582 --------------DFISELPQGYNTEVGEKGANLSGG 605 (703)
T ss_pred --------------HHHHHCCCCCCCCCEEECCCCCCH
T ss_conf --------------999736376774001241566733