HHsearch alignment for GI: 254780810 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.87 E-value=0.038 Score=33.28 Aligned_cols=118 Identities=20% Similarity=0.250 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCC-------------CEE-EEEECCC----C
Q ss_conf 532136888998865510231--2220487787899999999998611886-------------469-9995087----8
Q gi|254780810|r 156 ENKDISSRVIDLIAPIGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHPE-------------CYL-IVLLIDE----R 215 (423)
Q Consensus 156 ~p~~~~~~~id~~~pig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~~-------------v~~-i~~ligE----r 215 (423)
T Consensus 76 ~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQ--lP~flfydeeave~GGL~gp~av~IDTEnTFR 153 (333)
T TIGR02236 76 GKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ--LPEFLFYDEEAVEKGGLEGPKAVYIDTENTFR 153 (333)
T ss_pred CEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHC--CCCHHHCCCHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 5044486367656079600005888771007865787667655322--87112101100014776787689985597986
Q ss_pred HHHHHHHHH--HHC--------------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEECHHHHHHH
Q ss_conf 789999998--403--------------427823667888899999999999999999779928-9998163898776
Q gi|254780810|r 216 PEEVTDMQR--SVQ--------------GEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDV-VILLDSITRLCRA 276 (423)
Q Consensus 216 ~~ev~e~~~--~~~--------------~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dV-ll~~DslTR~ArA 276 (423)
T Consensus 154 PERI~qmA~GL~~g~l~~~melD~~evL~nI~vARA-yNS~HQmllve~~~~li~e~~~~~~pv~L~~VDSLtsHFRa 230 (333)
T TIGR02236 154 PERIEQMAKGLARGTLQAAMELDPDEVLKNIYVARA-YNSNHQMLLVEKAKELIKELKNEDKPVRLLIVDSLTSHFRA 230 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEE-ECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf 257999998631113666532787777203047785-26314799999999999730157994689998121002236