HHsearch alignment for GI: 254780810 and conserved domain: TIGR02236

>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.87  E-value=0.038  Score=33.28  Aligned_cols=118  Identities=20%  Similarity=0.250  Sum_probs=84.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCC-------------CEE-EEEECCC----C
Q ss_conf             532136888998865510231--2220487787899999999998611886-------------469-9995087----8
Q gi|254780810|r  156 ENKDISSRVIDLIAPIGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHPE-------------CYL-IVLLIDE----R  215 (423)
Q Consensus       156 ~p~~~~~~~id~~~pig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~~-------------v~~-i~~ligE----r  215 (423)
T Consensus        76 ~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQ--lP~flfydeeave~GGL~gp~av~IDTEnTFR  153 (333)
T TIGR02236        76 GKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ--LPEFLFYDEEAVEKGGLEGPKAVYIDTENTFR  153 (333)
T ss_pred             CEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHC--CCCHHHCCCHHHCCCCCCCCEEEEEECCCCCC
T ss_conf             5044486367656079600005888771007865787667655322--87112101100014776787689985597986


Q ss_pred             HHHHHHHHH--HHC--------------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEECHHHHHHH
Q ss_conf             789999998--403--------------427823667888899999999999999999779928-9998163898776
Q gi|254780810|r  216 PEEVTDMQR--SVQ--------------GEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDV-VILLDSITRLCRA  276 (423)
Q Consensus       216 ~~ev~e~~~--~~~--------------~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dV-ll~~DslTR~ArA  276 (423)
T Consensus       154 PERI~qmA~GL~~g~l~~~melD~~evL~nI~vARA-yNS~HQmllve~~~~li~e~~~~~~pv~L~~VDSLtsHFRa  230 (333)
T TIGR02236       154 PERIEQMAKGLARGTLQAAMELDPDEVLKNIYVARA-YNSNHQMLLVEKAKELIKELKNEDKPVRLLIVDSLTSHFRA  230 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEE-ECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf             257999998631113666532787777203047785-26314799999999999730157994689998121002236