HHsearch alignment for GI: 254780810 and conserved domain: TIGR02545
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379 FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=100.00 E-value=0 Score=759.77 Aligned_cols=355 Identities=24% Similarity=0.225 Sum_probs=322.3
Q ss_pred EEEEEECCCCE-EEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEE-------EECCCCCCCCCCEEECCCCCCCH
Q ss_conf 99854047702-67504548666655604601000012212598799988-------62468887630002222556887
Q gi|254780810|r 56 GVIEVLQDGFG-FLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSI-------RAPREGERYFALLKVNAINFDVP 127 (423)
Q Consensus 56 GvLEIl~dGyG-FLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~-------r~~~~~~~~~~L~rV~~vnG~~~ 127 (423)
T Consensus 28 G~~c~i~~~~~g~~~~~~aEVvGF~~~~~~lmP~~~~~Gi~~G~~V~~~~~~ad~~~~~~~~~~G~~LLGRv~D~lG~Pl 107 (439)
T TIGR02545 28 GDLCEIEPQEGGEEKHVLAEVVGFEGDRVILMPYEPLEGIRPGDRVFLLGDIADAGGRSLSIPVGDELLGRVIDALGRPL 107 (439)
T ss_pred CCEEEEECCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCEECCCCCCC
T ss_conf 62789965888521015689998738836986446555624576578634314654566420277444032386787865
Q ss_pred H----HHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8----851244300020001122343247786532136888998865510231222048778789999999999861188
Q gi|254780810|r 128 E----RVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHP 203 (423)
Q Consensus 128 d----~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~ 203 (423)
T Consensus 108 Dg~G~~~~~~~~~~~~~l~~~~pnpl~R~rI~~~l~tGVRaId~lLT~GrGQR~GIFAGSGVGKSTLLGMiAr~t~AD-- 185 (439)
T TIGR02545 108 DGKGAGGGLIDATVYRPLRREPPNPLDRRRIEEVLDTGVRAIDALLTIGRGQRLGIFAGSGVGKSTLLGMIARYTEAD-- 185 (439)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCC--
T ss_conf 787788876656555565678307467875786112123101110365564102663377444788988875066588--
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 64699995087878999999840-------34278236678888999999999999999997799289998163898776
Q gi|254780810|r 204 ECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRA 276 (423)
Q Consensus 204 ~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA 276 (423)
T Consensus 186 --V~VIALIGERGREV~EFiE~~LG~eGl~kSVVVVATSD~spl~R~~aA~~A~~iAEYFRDqGk~VLL~~DSlTRFAmA 263 (439)
T TIGR02545 186 --VNVIALIGERGREVKEFIEDDLGEEGLKKSVVVVATSDESPLMRIRAAYAATAIAEYFRDQGKDVLLLMDSLTRFAMA 263 (439)
T ss_pred --EEEEEEECCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH
T ss_conf --789984446566431355430351102540799827998689998888999999999986498347762117889989
Q ss_pred HHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCC---CCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHH
Q ss_conf 2001366777677-7520246650468752257---77777850012112012676554138898852266078980878
Q gi|254780810|r 277 YNVLMPSSGKILT-GGVDANALQRPKRFFGAAR---NIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKI 352 (423)
Q Consensus 277 ~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar---~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~l 352 (423)
T Consensus 264 qREigLa~GEPP~tkGYpPSVF~~Lp~L~ERaG~~p~~~~~GsITa~yTVLVe-GDD~~ePiAD~~RgiLDGHIvLsR~l 342 (439)
T TIGR02545 264 QREIGLAAGEPPTTKGYPPSVFSELPRLLERAGIVPGAKGGGSITAFYTVLVE-GDDMNEPIADAVRGILDGHIVLSRKL 342 (439)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEE-CCCCCCHHHHHHHHHCCCEEEECHHH
T ss_conf 88999871787666789704899999999870864698887305689999873-68998737877500102207732267
Q ss_pred HHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CHHHHHHHH
Q ss_conf 8479997405335422101551999999999999999612693789999999840289--989999864
Q gi|254780810|r 353 ADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTK--DNKDFFYSM 419 (423)
Q Consensus 353 a~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~--~n~e~l~~~ 419 (423)
T Consensus 343 A~~G~YPaIDvl~SiSR~m~~i~~~e~~~~a~~~r~l~a~Y~~~eDLi----~iGaY~~GSdp~~D~AI 407 (439)
T TIGR02545 343 AERGHYPAIDVLRSISRLMPDIVSPEHNKAARKLRKLLATYKDAEDLI----RIGAYKKGSDPEVDKAI 407 (439)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCCCHHHHHHH
T ss_conf 645889875722227887776279889999999999999888889999----81786468887899985