HHsearch alignment for GI: 254780810 and conserved domain: TIGR02858
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=98.03 E-value=3.8e-06 Score=59.57 Aligned_cols=130 Identities=22% Similarity=0.350 Sum_probs=80.4
Q ss_pred ECCCCCCCCCCCCEEECCCCCCC-------CCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCC
Q ss_conf 04548666655604601000012-------21259879998862468887630002222556887885124430002000
Q gi|254780810|r 70 SPDANYLAGPDDIYVSPSQIKSF-------SLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPL 142 (423)
Q Consensus 70 ~~~~~yl~~~~DiyVs~slir~f-------~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~ 142 (423)
T Consensus 31 ~~~~~y~~~~eD~~~~~~~~S~ySlYA~EeElk~GYI---Ti~---GGHRVGlaG~~V~E~~-~vk~ik~v~S~N----- 98 (282)
T TIGR02858 31 ESDSDYIPTVEDVEAILQLISQYSLYAFEEELKQGYI---TIE---GGHRVGLAGRCVLENG-KVKTIKNVASLN----- 98 (282)
T ss_pred CCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCEE---EEE---CCEEEEEECEEEEECC-CEEEEECCCCCC-----
T ss_conf 5887713028889999998763124565576507607---854---6726753037995078-464510546421-----
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-----CCCCCEEEEEECCCCH
Q ss_conf 112234324778653213688899886-5510231222048778789999999999861-----1886469999508787
Q gi|254780810|r 143 YPDKRFNMELNNPENKDISSRVIDLIA-PIGKGQRSLIVAPPRTGKTILLQNIAHSIKK-----NHPECYLIVLLIDERP 216 (423)
Q Consensus 143 ~p~~~i~le~~~~~p~~~~~~~id~~~-pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~-----~~~~v~~i~~ligEr~ 216 (423)
T Consensus 99 ---iRIaR-----E~~G~A~~~~~yL~d~~~~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KV--givDERS 168 (282)
T TIGR02858 99 ---IRIAR-----EVLGAADKILPYLVDRNGRVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKV--GIVDERS 168 (282)
T ss_pred ---EEEEE-----ECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCE--EEEECCH
T ss_conf ---33020-----0057756668877305894467888868898851048889888607854246899746--9984324
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780810|r 217 EEVTDM 222 (423)
Q Consensus 217 ~ev~e~ 222 (423)
T Consensus 169 E-IAgC 173 (282)
T TIGR02858 169 E-IAGC 173 (282)
T ss_pred H-HHHH
T ss_conf 6-5654