HHsearch alignment for GI: 254780810 and conserved domain: TIGR03305
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=563.15 Aligned_cols=324 Identities=16% Similarity=0.178 Sum_probs=303.6
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 66655604601000012212598799988624688876300022225568878851244300020001122343247786
Q gi|254780810|r 76 LAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNP 155 (423)
Q Consensus 76 l~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~ 155 (423)
T Consensus 40 ~~l~~~~V~~i~l~~t~Gl~~G~~V~~tg~~l~VpVG~~lLGRV~d~lG~PiDg~g~i~~~~~~~i~~~~p~~~~R~~~~ 119 (449)
T TIGR03305 40 SQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKS 119 (449)
T ss_pred EEECCCEEEEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12279889999904877888999999289954887172106788805665467899988764132357899855567778
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CC
Q ss_conf 53213688899886551023122204877878999999999986118864699995087878999999840-------34
Q gi|254780810|r 156 ENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QG 228 (423)
Q Consensus 156 ~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~ 228 (423)
T Consensus 120 e~l~TGIkaID~l~pigrGqr~gIfggaGvGKT~Ll~e~i~n~~~~~~~-v~V~~~IGER~rE~~e~~~el~~~g~l~~t 198 (449)
T TIGR03305 120 EVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQG-VSIFCGIGERCREGEELYREMKEAGVLDNT 198 (449)
T ss_pred CCEECCCEEHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC-EEEEEEEEEEHHHHHHHHHHHHHCCCCCEE
T ss_conf 6400284402302452457565665279998410189999865641488-689999745216799999998753665426
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHC
Q ss_conf 27823667888899999999999999999-77992899981638987762001366777677-75202466504687522
Q gi|254780810|r 229 EVISSTFDESAARHVQVAEMVIAKAKCLV-EYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGA 306 (423)
Q Consensus 229 ~vv~st~d~~~~~~~~~a~~a~~~a~~~~-e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ 306 (423)
T Consensus 199 v~V~a~~depp~~R~~~~~~a~tiAEyfrd~~g~dVLl~~D~ltr~a~A~rEvsl~lg~~P~~~GYpp~vf~~l~~L~ER 278 (449)
T TIGR03305 199 VMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEER 278 (449)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99983698987999999998776999988617980899996768999999899986389998778797199998999985
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHH-HCCCHHHHHHHHH
Q ss_conf 577777785001211201267655413889885226607898087884799974053354221015-5199999999999
Q gi|254780810|r 307 ARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKED-LLVERQDLQKVFM 385 (423)
Q Consensus 307 ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~-~l~~~~~~~~~~~ 385 (423)
T Consensus 279 ~~~~~-~GSITa~~~V~~~-~dD~tdPi~~~~~silDg~ivLsr~la~~G~yPAId~l~S~SRv~~~~iv~~~H~~va~~ 356 (449)
T TIGR03305 279 IATTS-DGAITSIQAVYVP-ADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLARE 356 (449)
T ss_pred HCCCC-CCCEEEEEEEECC-CCCCCCCHHHHHEEECCCEEEEEHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHH
T ss_conf 24899-9866788789713-887667555543101270278707689679999717763355348810067999999999
Q ss_pred HHHHHHCCCCHHHHHHH
Q ss_conf 99996126937899999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFL 402 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l 402 (423)
T Consensus 357 ~~~~la~y~el~diiai 373 (449)
T TIGR03305 357 VRQTLAQYEELKDIIAM 373 (449)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999988999999987