HHsearch alignment for GI: 254780810 and conserved domain: TIGR03324
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=0 Score=596.21 Aligned_cols=397 Identities=17% Similarity=0.115 Sum_probs=343.0
Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCC----CCCCCCCCE
Q ss_conf 9970998999999998389885766678999999987520587489999985404770267504548----666655604
Q gi|254780810|r 8 ELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDAN----YLAGPDDIY 83 (423)
Q Consensus 8 eL~~~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~----yl~~~~Diy 83 (423)
T Consensus 3 ~~~~~~~~~~~~-----~i~~~~~~~~---~~e~G~v~~vgdgia~v~Gl~~~~---~~el~~f~~~~~g~~~nle~~~v 71 (497)
T TIGR03324 3 EVLDKAFQQLDQ-----ARESFQPQLT---VQEVGTVESVSTGIARVHGLPGVG---FEELLRFPGGLLGIAFNVDEDEV 71 (497)
T ss_pred HHHHHHHHHHHH-----HHHHCCCCCE---EEEEEEEEEECCCEEEEECCCCCC---CCCEEEECCCCEEEEEECCCCCE
T ss_conf 689999999999-----9972488752---466679999748569997850104---48638808998899996378837
Q ss_pred EECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 60100001221259879998862468887630002222556887885124430002000112234324778653213688
Q gi|254780810|r 84 VSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSR 163 (423)
Q Consensus 84 Vs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~ 163 (423)
T Consensus 72 g~v~lg~~~~i~~G~~V~~TG~~l~VPVG~~lLGRVvd~LG~PiDGkgpi~~~~~~pie~~aP~i~~R~~V~epL~TGIk 151 (497)
T TIGR03324 72 GVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLK 151 (497)
T ss_pred EEEEECCCCCCCCCCEEEECCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99995698776899999858982287448887176458885567899998876410245789896347888871002414
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCC
Q ss_conf 899886551023122204877878999999999986118864699995087878999999840-------3427823667
Q gi|254780810|r 164 VIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFD 236 (423)
Q Consensus 164 ~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d 236 (423)
T Consensus 152 aID~liPIGrGQRelIigdrgtGKTtla~dtI--inqk~~~vicVyvaIGqr~seV~~~v~~l~~~gal~~TvVV~Ata~ 229 (497)
T TIGR03324 152 VIDALIPIGRGQRELILGDRQTGKTAIAIDTI--LNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGN 229 (497)
T ss_pred HHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH--HHCCCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 55424655677467764588888008899999--7045667189999732507879999999874875234179995688
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCC---C
Q ss_conf 88889999999999999999977992899981638987762001366777677-7520246650468752257777---7
Q gi|254780810|r 237 ESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIK---E 312 (423)
Q Consensus 237 ~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~---~ 312 (423)
T Consensus 230 dpa~lr~~Apyaa~aiAEyFrd~G~dVLlv~DdLTr~A~A~REisLll~rpPgreaYPgdvFylhsrLLERA~~l~~~~g 309 (497)
T TIGR03324 230 DPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELG 309 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99899988789999999999968974899997806999999999986489998778893598770788873247789999
Q ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 78500121120126765541388988522660789808788479997405335422101551999999999999999612
Q gi|254780810|r 313 GGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSS 392 (423)
Q Consensus 313 ~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~ 392 (423)
T Consensus 310 gGSiTalpivet~-~~D~sayIptnvisItDGqI~L~~~Lf~~G~~PAIdvg~SVSRVG~~aq~~~~k~vag~lrl~laq 388 (497)
T TIGR03324 310 GGSLTALPIIETE-AQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLAYAQ 388 (497)
T ss_pred CCCEEEEEEEECC-CCCCCCCHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCEECCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9772324799802-886566445422201086799724076579976435687731367243058999874456999998
Q ss_pred CCCHHHHHHHHH--------HHHCCCCHHHHHHH
Q ss_conf 693789999999--------84028998999986
Q gi|254780810|r 393 MNSSDAIEFLID--------KLKQTKDNKDFFYS 418 (423)
Q Consensus 393 ~~~~e~~~~l~~--------~~~~~~~n~e~l~~ 418 (423)
T Consensus 389 ~~El~~f~qfgs~ld~~t~~~l~rG~r~~e~lkQ 422 (497)
T TIGR03324 389 FEELETFARFGARLDENTRKTIEHGRRIRACLKQ 422 (497)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999876244489999999887999998667