HHsearch alignment for GI: 254780810 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.96 E-value=0.097 Score=30.58 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1368889988655102312220487787899999999998611886469999
Q gi|254780810|r 159 DISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL 210 (423)
Q Consensus 159 ~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ 210 (423)
T Consensus 23 ~~~~~~l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~--~~~yl 72 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGK--SAIYL 72 (226)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC--CEEEE
T ss_conf 999999998764668886999899999889999999999862699--57995