HHsearch alignment for GI: 254780810 and conserved domain: TIGR03498
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=584.26 Aligned_cols=325 Identities=23% Similarity=0.219 Sum_probs=300.8
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHH-CCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000-20001122343247
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDN-LTPLYPDKRFNMEL 152 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~-l~p~~p~~~i~le~ 152 (423)
T Consensus 39 EVvg~~~~~v~l~~~~~t~Gi~~G~~V~~tg~~~~v~vg~~lLGRVid~~G~PlDg~g~~~~~~~~~~i~~~~p~p~~R~ 118 (418)
T TIGR03498 39 EVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRK 118 (418)
T ss_pred EEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCHHHCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCC
T ss_conf 99998199899999079889899999996899748881742205175446763578999877756876516899822106
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------
Q ss_conf 78653213688899886551023122204877878999999999986118864699995087878999999840------
Q gi|254780810|r 153 NNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------ 226 (423)
Q Consensus 153 ~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------ 226 (423)
T Consensus 119 ~i~e~l~TGIraID~l~pig~GQRigIfgg~GvGKt~Ll~~i~~~~~ad----v~V~aliGeRgrEv~efi~~~~~~~~l 194 (418)
T TIGR03498 119 RVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDAD----VVVIALVGERGREVREFLEDDLGEEGL 194 (418)
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC----EEEEEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf 8887431576021201550257664113789998889999998750798----689988302689999999986531564
Q ss_pred -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHH
Q ss_conf -342782366788889999999999999999977992899981638987762001366777677-752024665046875
Q gi|254780810|r 227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFF 304 (423)
Q Consensus 227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~ 304 (423)
T Consensus 195 ~~tvvv~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ 274 (418)
T TIGR03498 195 KRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLL 274 (418)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 42699994488987888888878778999998679838999557258899999999865899986778841777726878
Q ss_pred HCCC-CCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 2257-777778500121120126765541388988522660789808788479997405335422101551999999999
Q gi|254780810|r 305 GAAR-NIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKV 383 (423)
Q Consensus 305 ~~ar-~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~ 383 (423)
T Consensus 275 ERag~~~~~~GSIT~~~~v~~~-~dD~~dpi~d~~~~i~Dg~ivLsr~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a 353 (418)
T TIGR03498 275 ERAGPGAEGKGSITGIFTVLVD-GDDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSPEERKLV 353 (418)
T ss_pred HHHCCCCCCCEEEEEEEEEECC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHH
T ss_conf 6513689998569999999633-888677617777676263899848898679999708852664448543569999999
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999961269378999999
Q gi|254780810|r 384 FMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 384 ~~~r~~l~~~~~~e~~~~l~ 403 (423)
T Consensus 354 ~~~r~~la~y~e~~dli~~g 373 (418)
T TIGR03498 354 RRLRALLARYEETEDLIRLG 373 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999889999999974