HHsearch alignment for GI: 254780810 and conserved domain: TIGR03498

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00  E-value=0  Score=584.26  Aligned_cols=325  Identities=23%  Similarity=0.219  Sum_probs=300.8

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHH-CCCCCCCCCCCCCC
Q ss_conf             86666556046010000122125987999886246888763000222255688788512443000-20001122343247
Q gi|254780810|r   74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDN-LTPLYPDKRFNMEL  152 (423)
Q Consensus        74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~-l~p~~p~~~i~le~  152 (423)
T Consensus        39 EVvg~~~~~v~l~~~~~t~Gi~~G~~V~~tg~~~~v~vg~~lLGRVid~~G~PlDg~g~~~~~~~~~~i~~~~p~p~~R~  118 (418)
T TIGR03498        39 EVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRK  118 (418)
T ss_pred             EEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCHHHCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCC
T ss_conf             99998199899999079889899999996899748881742205175446763578999877756876516899822106


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH------
Q ss_conf             78653213688899886551023122204877878999999999986118864699995087878999999840------
Q gi|254780810|r  153 NNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------  226 (423)
Q Consensus       153 ~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------  226 (423)
T Consensus       119 ~i~e~l~TGIraID~l~pig~GQRigIfgg~GvGKt~Ll~~i~~~~~ad----v~V~aliGeRgrEv~efi~~~~~~~~l  194 (418)
T TIGR03498       119 RVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDAD----VVVIALVGERGREVREFLEDDLGEEGL  194 (418)
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCC----EEEEEEEEEEHHHHHHHHHHHHHCCCC
T ss_conf             8887431576021201550257664113789998889999998750798----689988302689999999986531564


Q ss_pred             -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHH
Q ss_conf             -342782366788889999999999999999977992899981638987762001366777677-752024665046875
Q gi|254780810|r  227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFF  304 (423)
Q Consensus       227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~  304 (423)
T Consensus       195 ~~tvvv~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~  274 (418)
T TIGR03498       195 KRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLL  274 (418)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             42699994488987888888878778999998679838999557258899999999865899986778841777726878


Q ss_pred             HCCC-CCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf             2257-777778500121120126765541388988522660789808788479997405335422101551999999999
Q gi|254780810|r  305 GAAR-NIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKV  383 (423)
Q Consensus       305 ~~ar-~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~  383 (423)
T Consensus       275 ERag~~~~~~GSIT~~~~v~~~-~dD~~dpi~d~~~~i~Dg~ivLsr~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a  353 (418)
T TIGR03498       275 ERAGPGAEGKGSITGIFTVLVD-GDDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSPEERKLV  353 (418)
T ss_pred             HHHCCCCCCCEEEEEEEEEECC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHH
T ss_conf             6513689998569999999633-888677617777676263899848898679999708852664448543569999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999961269378999999
Q gi|254780810|r  384 FMLRRIVSSMNSSDAIEFLI  403 (423)
Q Consensus       384 ~~~r~~l~~~~~~e~~~~l~  403 (423)
T Consensus       354 ~~~r~~la~y~e~~dli~~g  373 (418)
T TIGR03498       354 RRLRALLARYEETEDLIRLG  373 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999889999999974