HHsearch alignment for GI: 254780810 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.035 Score=33.45 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
T Consensus 20 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~ 49 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 898799799998788999899999995884