HHsearch alignment for GI: 254780810 and conserved domain: cd00983

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.

Probab=97.40  E-value=0.0014  Score=42.68  Aligned_cols=107  Identities=24%  Similarity=0.243  Sum_probs=73.8

Q ss_pred             CCCCHHHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---CCE
Q ss_conf             5321368889988655---1023122204877878999999999986118864699995087878999999840---342
Q gi|254780810|r  156 ENKDISSRVIDLIAPI---GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---QGE  229 (423)
Q Consensus       156 ~p~~~~~~~id~~~pi---g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---~~~  229 (423)
T Consensus        34 ~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~g--g~~--~~iDaE~a~d~~~a~~lGVD~~~  109 (325)
T cd00983          34 EVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLG--GTV--AFIDAEHALDPVYAKKLGVDLDN  109 (325)
T ss_pred             CEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CEE--EEEEHHHCCCHHHHHHCCCCHHH
T ss_conf             34626819999997589966880899988987779999999999987359--839--99962542598999980998467


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf             782366788889999999999999999977992899981638987
Q gi|254780810|r  230 VISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC  274 (423)
Q Consensus       230 vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A  274 (423)
T Consensus       110 l~~~qp~--------~~Eq~l~i~~~li~s~~~dliViDSvaal~  146 (325)
T cd00983         110 LLISQPD--------TGEQALEIADSLVRSGAVDLIVVDSVAALV  146 (325)
T ss_pred             EEEECCC--------HHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf             5896663--------899999999997515887679981511236