HHsearch alignment for GI: 254780810 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.89 E-value=1.2e-21 Score=161.58 Aligned_cols=153 Identities=28% Similarity=0.339 Sum_probs=130.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 22204877878999999999986118864699995087878999999840-------34278236678888999999999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMV 249 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a 249 (423)
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~--~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 74 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL----- 74 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH-----
T ss_conf 899989999899999999999876--3997999986664489999999862246713079993599976999999-----
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 99999999779928999816389877620013667776777520246650468752257777778500121120126765
Q gi|254780810|r 250 IAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSR 329 (423)
Q Consensus 250 ~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~ 329 (423)
T Consensus 75 -~~~~~~~~~~~~vliiiDSit~~~~a~~e~~--------~g~~~~v~~~~~~L~~~Ak----~~~itvi~i~~v~~-d~ 140 (165)
T cd01120 75 -SKAERLRERGGDDLIILDELTRLVRALREIR--------EGYPGELDEELRELLERAR----KGGVTVIFTLQVPS-GD 140 (165)
T ss_pred -HHHHHHHHCCCCEEEEEECHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHH----CCCCEEEEEEEEEC-CC
T ss_conf -9999999869977999928899887740015--------8867899999999999997----79828999998433-77
Q ss_pred CCCH----HHHHHHHCCCCEEEEEH
Q ss_conf 5413----88988522660789808
Q gi|254780810|r 330 MDEV----IFEEFKGTGNSEIVLER 350 (423)
Q Consensus 330 ~d~~----i~~~~~~~~d~~i~L~r 350 (423)
T Consensus 141 ~~~~~~~~g~~~l~~~~d~~i~L~r 165 (165)
T cd01120 141 KGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred CCCCCCCCHHHHHHHHCCEEEEEEC
T ss_conf 8997725388888364266999839