HHsearch alignment for GI: 254780810 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.34 E-value=0.0022 Score=41.34 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHC----CCCCEEEEEECCCC---HHHHHHHHHHH---
Q ss_conf 136888998865--5102312220487787899999999998611----88646999950878---78999999840---
Q gi|254780810|r 159 DISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKN----HPECYLIVLLIDER---PEEVTDMQRSV--- 226 (423)
Q Consensus 159 ~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~----~~~v~~i~~ligEr---~~ev~e~~~~~--- 226 (423)
T Consensus 2 sTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyI-dtE~~f~~~Rl~qia~~~~~~ 80 (235)
T cd01123 2 TTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYI-DTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCCCHHHHHHHHHHHCCC
T ss_conf 8885789965079964787999999999849999999999984247536789629999-536775889999999971347
Q ss_pred -----CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf -----342782366788889999999999999999977992899981638987762
Q gi|254780810|r 227 -----QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAY 277 (423)
Q Consensus 227 -----~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~ 277 (423)
T Consensus 81 ~~~~l~~i~~~~~~~--~~~l~---~~l~~l~~~l~~~~~v~LvVIDSia~l~r~e 131 (235)
T cd01123 81 PEEVLDNIYVARAYN--SDHQL---QLLEELEAILIESSRIKLVIVDSVTALFRAE 131 (235)
T ss_pred HHHHHCCEEEECCCC--HHHHH---HHHHHHHHHHHCCCCCEEEEEEECHHHHHHH
T ss_conf 245422547963799--99999---9999999987303772399996104555666