HHsearch alignment for GI: 254780810 and conserved domain: cd01123

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.34  E-value=0.0022  Score=41.34  Aligned_cols=113  Identities=19%  Similarity=0.288  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHC----CCCCEEEEEECCCC---HHHHHHHHHHH---
Q ss_conf             136888998865--5102312220487787899999999998611----88646999950878---78999999840---
Q gi|254780810|r  159 DISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKN----HPECYLIVLLIDER---PEEVTDMQRSV---  226 (423)
Q Consensus       159 ~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~----~~~v~~i~~ligEr---~~ev~e~~~~~---  226 (423)
T Consensus         2 sTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyI-dtE~~f~~~Rl~qia~~~~~~   80 (235)
T cd01123           2 TTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYI-DTEGTFRPERLVQIAERFGLD   80 (235)
T ss_pred             CCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCCCHHHHHHHHHHHCCC
T ss_conf             8885789965079964787999999999849999999999984247536789629999-536775889999999971347


Q ss_pred             -----CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf             -----342782366788889999999999999999977992899981638987762
Q gi|254780810|r  227 -----QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAY  277 (423)
Q Consensus       227 -----~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~  277 (423)
T Consensus        81 ~~~~l~~i~~~~~~~--~~~l~---~~l~~l~~~l~~~~~v~LvVIDSia~l~r~e  131 (235)
T cd01123          81 PEEVLDNIYVARAYN--SDHQL---QLLEELEAILIESSRIKLVIVDSVTALFRAE  131 (235)
T ss_pred             HHHHHCCEEEECCCC--HHHHH---HHHHHHHHHHHCCCCCEEEEEEECHHHHHHH
T ss_conf             245422547963799--99999---9999999987303772399996104555666