HHsearch alignment for GI: 254780810 and conserved domain: cd01133

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00  E-value=0  Score=510.22  Aligned_cols=264  Identities=20%  Similarity=0.233  Sum_probs=245.6

Q ss_pred             ECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             24688876300022225568878851244300020001122343247786532136888998865510231222048778
Q gi|254780810|r  106 APREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRT  185 (423)
Q Consensus       106 ~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~  185 (423)
T Consensus         1 Pl~ipVg~~lLGRVvd~~G~PiDg~~~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIr~ID~l~pigkGQR~~I~~~~g~   80 (274)
T cd01133           1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV   80 (274)
T ss_pred             CCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCC
T ss_conf             96577680421656368965248999999986042568996845607878731158666644466147857787579999


Q ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78999999999986118864699995087878999999840-------34278236678888999999999999999997
Q gi|254780810|r  186 GKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVE  258 (423)
Q Consensus       186 gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e  258 (423)
T Consensus        81 GKt~ll~~ii~~~~~~~~~-v~V~~~IGer~~ev~~~~~~~~~~~~l~~tvvv~~tad~~~~~r~~~~~~a~aiAE~frd  159 (274)
T cd01133          81 GKTVLIMELINNIAKAHGG-YSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRD  159 (274)
T ss_pred             CCCHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             8236899999999850898-799998425548899999972035665337999834555405789999999999999997


Q ss_pred             -CCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHH
Q ss_conf             -7992899981638987762001366777677-75202466504687522577777785001211201267655413889
Q gi|254780810|r  259 -YGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFE  336 (423)
Q Consensus       259 -~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~  336 (423)
T Consensus       160 ~~G~dVLll~DslTr~A~A~reis~~~g~~P~~~gyp~~l~~~~~~l~ER~~~~-~~GSiT~i~tv~~~-~dD~~dpi~~  237 (274)
T cd01133         160 EEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST-KKGSITSVQAVYVP-ADDLTDPAPA  237 (274)
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCEEEEEEEECC-CCCCCCCHHH
T ss_conf             289859999718689999999888862899986666830788999999974488-89874688899745-8887661778


Q ss_pred             HHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf             885226607898087884799974053354221015
Q gi|254780810|r  337 EFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKED  372 (423)
Q Consensus       337 ~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~  372 (423)
T Consensus       238 ~~~~i~dG~ivLsr~la~~g~yPAIdv~~S~SR~m~  273 (274)
T cd01133         238 TTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILD  273 (274)
T ss_pred             HHHHHHCEEEEECHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             887740729998588996799996377653101258