HHsearch alignment for GI: 254780810 and conserved domain: cd01134
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=0 Score=466.00 Aligned_cols=273 Identities=19% Similarity=0.218 Sum_probs=233.0
Q ss_pred CCCCCCEEE-------EEEEECCCCCCCCCCEEECCCCC---------CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 212598799-------98862468887630002222556---------88788512443000200011223432477865
Q gi|254780810|r 93 SLKTGDTVE-------GSIRAPREGERYFALLKVNAINF---------DVPERVRNKIHFDNLTPLYPDKRFNMELNNPE 156 (423)
Q Consensus 93 ~Lr~GD~V~-------g~~r~~~~~~~~~~L~rV~~vnG---------~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~ 156 (423)
T Consensus 60 ~V~~GDi~G~V~E~~~i~HkImvpp~~~G~v~~i~~~g~y~v~~~~~~~~~~g~~~~~~m~q~WPVr~prPv~er~~~~~ 139 (369)
T cd01134 60 HVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIAPAGDYTVDDVILEVEFDGKKEEITMVQKWPVRQPRPVKEKLPPNE 139 (369)
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 96278679998557836777864898737999991589852465699970689846877887077566775111389998
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH-----------
Q ss_conf 321368889988655102312220487787899999999998611886469999508787899999984-----------
Q gi|254780810|r 157 NKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS----------- 225 (423)
Q Consensus 157 p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~----------- 225 (423)
T Consensus 140 PL~TGir~ID~l~Pig~Gqr~~I~g~~g~GKT~l~~~i~k~~~~d----v~Vyv~iGeRg~ev~e~l~~f~el~~~~~g~ 215 (369)
T cd01134 140 PLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSNSD----IVIYVGCGERGNEMTEVLEEFPELTDPVTGE 215 (369)
T ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCC----EEEEEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 626535688742532147646776687768999999998537998----8999997114189999999867741333466
Q ss_pred ---HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCH
Q ss_conf ---0342782366788889999999999999999977992899981638987762001366777677-752024665046
Q gi|254780810|r 226 ---VQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPK 301 (423)
Q Consensus 226 ---~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~ 301 (423)
T Consensus 216 ~~~~rtvvVa~ts~~p~~~r~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l~e~P~~egYP~~l~s~l~ 295 (369)
T cd01134 216 PLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLA 295 (369)
T ss_pred CHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 41020368742777998899888989999999999689887998075899999988998863899876571931998888
Q ss_pred HHHHCCCCC------CCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 875225777------777850012112012676554138898852266078980878847999740533542210
Q gi|254780810|r 302 RFFGAARNI------KEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRK 370 (423)
Q Consensus 302 ~~~~~ar~~------~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~ 370 (423)
T Consensus 296 ~l~ERag~~~~~~~~~~~GSiT~~~~V~~~-ggD~s~pI~~~~~si~d~~i~L~~~La~~g~~PAId~~~S~Sry 369 (369)
T cd01134 296 SFYERAGRVKCLGSPGREGSVTIVGAVSPP-GGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred HHHHHCCCCCCCCCCCCCCEEEEEEEEECC-CCCCCCCHHHHHHHHHCEEEEECHHHHHCCCCCCCCCCCCCCCC
T ss_conf 998721443236899998117789899756-98867757888876621588985889867999971874366588