HHsearch alignment for GI: 254780810 and conserved domain: cd01134

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00  E-value=0  Score=466.00  Aligned_cols=273  Identities=19%  Similarity=0.218  Sum_probs=233.0

Q ss_pred             CCCCCCEEE-------EEEEECCCCCCCCCCEEECCCCC---------CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             212598799-------98862468887630002222556---------88788512443000200011223432477865
Q gi|254780810|r   93 SLKTGDTVE-------GSIRAPREGERYFALLKVNAINF---------DVPERVRNKIHFDNLTPLYPDKRFNMELNNPE  156 (423)
Q Consensus        93 ~Lr~GD~V~-------g~~r~~~~~~~~~~L~rV~~vnG---------~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~  156 (423)
T Consensus        60 ~V~~GDi~G~V~E~~~i~HkImvpp~~~G~v~~i~~~g~y~v~~~~~~~~~~g~~~~~~m~q~WPVr~prPv~er~~~~~  139 (369)
T cd01134          60 HVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIAPAGDYTVDDVILEVEFDGKKEEITMVQKWPVRQPRPVKEKLPPNE  139 (369)
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             96278679998557836777864898737999991589852465699970689846877887077566775111389998


Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH-----------
Q ss_conf             321368889988655102312220487787899999999998611886469999508787899999984-----------
Q gi|254780810|r  157 NKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS-----------  225 (423)
Q Consensus       157 p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~-----------  225 (423)
T Consensus       140 PL~TGir~ID~l~Pig~Gqr~~I~g~~g~GKT~l~~~i~k~~~~d----v~Vyv~iGeRg~ev~e~l~~f~el~~~~~g~  215 (369)
T cd01134         140 PLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSNSD----IVIYVGCGERGNEMTEVLEEFPELTDPVTGE  215 (369)
T ss_pred             CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCC----EEEEEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             626535688742532147646776687768999999998537998----8999997114189999999867741333466


Q ss_pred             ---HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCH
Q ss_conf             ---0342782366788889999999999999999977992899981638987762001366777677-752024665046
Q gi|254780810|r  226 ---VQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPK  301 (423)
Q Consensus       226 ---~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~  301 (423)
T Consensus       216 ~~~~rtvvVa~ts~~p~~~r~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l~e~P~~egYP~~l~s~l~  295 (369)
T cd01134         216 PLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLA  295 (369)
T ss_pred             CHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             41020368742777998899888989999999999689887998075899999988998863899876571931998888


Q ss_pred             HHHHCCCCC------CCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             875225777------777850012112012676554138898852266078980878847999740533542210
Q gi|254780810|r  302 RFFGAARNI------KEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRK  370 (423)
Q Consensus       302 ~~~~~ar~~------~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~  370 (423)
T Consensus       296 ~l~ERag~~~~~~~~~~~GSiT~~~~V~~~-ggD~s~pI~~~~~si~d~~i~L~~~La~~g~~PAId~~~S~Sry  369 (369)
T cd01134         296 SFYERAGRVKCLGSPGREGSVTIVGAVSPP-GGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY  369 (369)
T ss_pred             HHHHHCCCCCCCCCCCCCCEEEEEEEEECC-CCCCCCCHHHHHHHHHCEEEEECHHHHHCCCCCCCCCCCCCCCC
T ss_conf             998721443236899998117789899756-98867757888876621588985889867999971874366588