HHsearch alignment for GI: 254780810 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.66 E-value=0.0012 Score=43.16 Aligned_cols=173 Identities=17% Similarity=0.165 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHHHH-----CCE
Q ss_conf 136888998865--51023122204877878999999999986118864699995087--878999999840-----342
Q gi|254780810|r 159 DISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE--RPEEVTDMQRSV-----QGE 229 (423)
Q Consensus 159 ~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE--r~~ev~e~~~~~-----~~~ 229 (423)
T Consensus 2 sTG~~~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~--~v~Yi-dtE~~~~er~~qi~~~~~~~~~~~i 78 (218)
T cd01394 2 PTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGK--KVAYI-DTEGLSSERFRQIAGDRPERAASSI 78 (218)
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--EEEEE-ECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98807899985699878879999899998499999999999863698--69999-6655676999999875366653051
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHCHHHHHCCC
Q ss_conf 78236678888999999999999999997799289998163898776200136677767775202466-50468752257
Q gi|254780810|r 230 VISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANAL-QRPKRFFGAAR 308 (423)
Q Consensus 230 vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l-~~~~~~~~~ar 308 (423)
T Consensus 79 ~v~~~~~~~~------~~~~i~~~~~~~~~~-~~lvViDSi~tl~~~e~~~~~~~~~------~~r~l~~~~~~L~~~Ak 145 (218)
T cd01394 79 IVFEPMDFNE------QGRAIQETETFADEK-VDLVVVDSATALYRLELGDDDTTIK------NYRELAKQLTFLLWLAR 145 (218)
T ss_pred EEECCCCHHH------HHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHCCCCCCHHH------HHHHHHHHHHHHHHHHH
T ss_conf 4626787688------999999999764147-7299991404554554068964799------99999999999999987
Q ss_pred CCCCCCCCEEEEEEEE--CCCCCCCCHHH-HHHHHCCCCEEEEEHH
Q ss_conf 7777785001211201--26765541388-9885226607898087
Q gi|254780810|r 309 NIKEGGSLTIIGTALV--DTGSRMDEVIF-EEFKGTGNSEIVLERK 351 (423)
Q Consensus 309 ~~~~~Gs~T~~~t~lv--etg~~~d~~i~-~~~~~~~d~~i~L~r~ 351 (423)
T Consensus 146 ~----~~~~vil~nqVt~~~~~~~~~p~GG~~LeH~vd~vl~~e~~ 187 (218)
T cd01394 146 K----HDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVILRLEKL 187 (218)
T ss_pred H----CCCEEEEEEEEEEECCCCCCCCCCCHHHHHHCCEEEEEECC
T ss_conf 6----69889999215884577756556720414110289999848