HHsearch alignment for GI: 254780810 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.92 E-value=0.078 Score=31.18 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=25.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
T Consensus 21 l~i~~Gei~gliG~nGaGKSTL~~~i~G 48 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 9988998999998999739999999967