HHsearch alignment for GI: 254780810 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.16 E-value=0.037 Score=33.33 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 865510231222048778789999999999861
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
T Consensus 20 s~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p 52 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 899889989999999998599999999779889