HHsearch alignment for GI: 254780810 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.014 Score=36.14 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=26.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
T Consensus 23 l~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~ 52 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 998599899999999983999999997677