HHsearch alignment for GI: 254780810 and conserved domain: cd03229

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57  E-value=0.0088  Score=37.41  Aligned_cols=29  Identities=31%  Similarity=0.453  Sum_probs=26.1

Q ss_pred             HHHHCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf             65510231222048778789999999999
Q gi|254780810|r  169 APIGKGQRSLIVAPPRTGKTILLQNIAHS  197 (423)
Q Consensus       169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~  197 (423)
T Consensus        21 ~~i~~Ge~~~ivGpSG~GKSTllr~i~Gl   49 (178)
T cd03229          21 LNIEAGEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             69889989999999998399999999859