HHsearch alignment for GI: 254780810 and conserved domain: cd03230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53 E-value=0.071 Score=31.45 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=27.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 65510231222048778789999999999861
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKK 200 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~ 200 (423)
T Consensus 21 l~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p 52 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 78879939999878997999999999768577