HHsearch alignment for GI: 254780810 and conserved domain: cd03233

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41  E-value=0.029  Score=34.03  Aligned_cols=30  Identities=23%  Similarity=0.465  Sum_probs=26.5

Q ss_pred             HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             655102312220487787899999999998
Q gi|254780810|r  169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI  198 (423)
Q Consensus       169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~  198 (423)
T Consensus        28 ~~i~~Gei~~llG~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          28 GVVKPGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             EEECCCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             898098499999899998899999983787