HHsearch alignment for GI: 254780810 and conserved domain: cd03246

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.10  E-value=0.015  Score=35.82  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=27.4

Q ss_conf             6551023122204877878999999999986
Q gi|254780810|r  169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIK  199 (423)
Q Consensus       169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~  199 (423)
T Consensus        23 l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~   53 (173)
T cd03246          23 FSIEPGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_conf             9985999999999999809999999966666