HHsearch alignment for GI: 254780810 and conserved domain: cd03259
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.04 Score=33.10 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=26.2
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 655102312220487787899999999998
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSI 198 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~ 198 (423)
T Consensus 21 ~~i~~Gei~~iiGpnGaGKSTl~~~i~Gl~ 50 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 798899899999999973999999997599