HHsearch alignment for GI: 254780810 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.0087 Score=37.46 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 6551023122204877878999999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
T Consensus 25 l~i~~Ge~~~iiGpsGsGKSTLl~~i~G 52 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8987998999999999579999999975