HHsearch alignment for GI: 254780810 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.0089 Score=37.41 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=40.2
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---EC-CCCHHHHHHHHHHHCCEEEEC
Q ss_conf 8655102312220487787899999999998611886469999---50-878789999998403427823
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL---LI-DERPEEVTDMQRSVQGEVISS 233 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~---li-gEr~~ev~e~~~~~~~~vv~s 233 (423)
T Consensus 44 sl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~---p~~G~I~~~G~~i~~~~~~~l~~~r~~~igmVFQ~ 110 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC---CCCEEEEECCEECCCCCHHHHHHHHCCCEEEEEEC
T ss_conf 75888999999998998489999999975999---99759999999999999899988525646999615