HHsearch alignment for GI: 254780810 and conserved domain: pfam00006
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=100.00 E-value=0 Score=451.67 Aligned_cols=205 Identities=33% Similarity=0.464 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC-------CEEEE
Q ss_conf 36888998865510231222048778789999999999861188646999950878789999998403-------42782
Q gi|254780810|r 160 ISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQ-------GEVIS 232 (423)
Q Consensus 160 ~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~-------~~vv~ 232 (423)
T Consensus 1 TGi~~ID~l~pig~GQr~~I~g~~g~GKt~l~~~i~~~~~~---~~~~V~~~iGer~~ev~~~~~~~~~~~~~~~t~vv~ 77 (213)
T pfam00006 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKA---DVVEVYVLIGERGREVAEFIEELLGEGALKRTVVVA 77 (213)
T ss_pred CCCCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH---CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 98400020166457888778789999889999999985661---893599813777799999999752137665069998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCC
Q ss_conf 366788889999999999999999977992899981638987762001366777677-7520246650468752257777
Q gi|254780810|r 233 STFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIK 311 (423)
Q Consensus 233 st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~ 311 (423)
T Consensus 78 ~~~d~~~~~r~~~~~~a~~~AEyf~~~G~dVlvi~Dsltr~A~A~reis~~~g~~p~~~gyp~~~~~~~~~l~ERag~~~ 157 (213)
T pfam00006 78 ATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFARALREISLLLGEPPGREGYPGSLFSDLARLLERAGKVE 157 (213)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 46889878999999999999999997699689983780599999876500147998545639178888799998753468
Q ss_pred CCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCC
Q ss_conf 778500121120126765541388988522660789808788479997405335422
Q gi|254780810|r 312 EGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGT 368 (423)
Q Consensus 312 ~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~s 368 (423)
T Consensus 158 ~~GSiT~l~tv~~~~-~d~~dpi~~~~~~~~dg~ivLsr~la~~g~~PAId~~~S~S 213 (213)
T pfam00006 158 GGGSITALPTVLVPG-GDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213 (213)
T ss_pred CCCCEEEEEEEEECC-CCCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCC
T ss_conf 886347888998048-88675156765211355999968999679999728755789