HHsearch alignment for GI: 254780810 and conserved domain: pfam00154

>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.

Probab=97.47  E-value=0.0012  Score=43.21  Aligned_cols=106  Identities=24%  Similarity=0.231  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---CCEE
Q ss_conf             321368889988655---1023122204877878999999999986118864699995087878999999840---3427
Q gi|254780810|r  157 NKDISSRVIDLIAPI---GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---QGEV  230 (423)
Q Consensus       157 p~~~~~~~id~~~pi---g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---~~~v  230 (423)
T Consensus        32 ~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~--gg~~~--~iD~E~a~d~~~a~~lGVD~~~l  107 (322)
T pfam00154        32 VISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAA--FIDAEHALDPVYAKKLGVDIDNL  107 (322)
T ss_pred             EEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEE--EEEHHHHCCHHHHHHCCCCHHHE
T ss_conf             461580899998758997787089998898777899999999999734--99389--98536605988999809880253


Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf             82366788889999999999999999977992899981638987
Q gi|254780810|r  231 ISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC  274 (423)
Q Consensus       231 v~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~A  274 (423)
T Consensus       108 ~~~qpd--------~~Eqal~i~~~li~~~~~~liViDSvaal~  143 (322)
T pfam00154       108 LVSQPD--------TGEQALEIADMLVRSGAVDLIVVDSVAALV  143 (322)
T ss_pred             EEECCC--------HHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf             897788--------399999999998537997659982534567