HHsearch alignment for GI: 254780810 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=97.25 E-value=0.0014 Score=42.72 Aligned_cols=72 Identities=29% Similarity=0.335 Sum_probs=45.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22204877878999999999986118864699995087878999999840342782366788889999999999999999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCL 256 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~ 256 (423)
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~~~~~-----~-~~~s~~------------------------~------i~~~~di~~~l 96 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANEMGVN-----I-RITSGP------------------------A------LEKPGDLAAIL 96 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----E-EEECCH------------------------H------HHHHHHHHHHH
T ss_conf 7887899998889999999840875-----3-761426------------------------6------64389999999
Q ss_pred HHCCCCEEEEEECHHHHHHHHHCCCCCC
Q ss_conf 9779928999816389877620013667
Q gi|254780810|r 257 VEYGLDVVILLDSITRLCRAYNVLMPSS 284 (423)
Q Consensus 257 ~e~G~dVll~~DslTR~ArA~~~~~~~~ 284 (423)
T Consensus 97 ~~~~~~~ILFIDEIHr~nK~qqd~Llp~ 124 (234)
T pfam05496 97 TNLEPGDVLFIDEIHRLNRAVEEILYPA 124 (234)
T ss_pred HHCCCCCEEEEECHHHCCHHHHHHCCCC
T ss_conf 8458998899966543587688744553