HHsearch alignment for GI: 254780810 and conserved domain: pfam05729

>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.

Probab=96.52  E-value=0.0021  Score=41.52  Aligned_cols=85  Identities=20%  Similarity=0.277  Sum_probs=45.5

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHCC--CCC-EEEEEECCCCH--H--HHHHHHHHHCCEEEECCCCCCHHHHHHHHH
Q ss_conf             3122204877878999999999986118--864-69999508787--8--999999840342782366788889999999
Q gi|254780810|r  175 QRSLIVAPPRTGKTILLQNIAHSIKKNH--PEC-YLIVLLIDERP--E--EVTDMQRSVQGEVISSTFDESAARHVQVAE  247 (423)
Q Consensus       175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~--~~v-~~i~~ligEr~--~--ev~e~~~~~~~~vv~st~d~~~~~~~~~a~  247 (423)
T Consensus         1 r~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~~----~-~~~~--------   67 (165)
T pfam05729         1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWPE----P-AAPV--------   67 (165)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCCC----C-CCCH--------
T ss_conf             98999827989899999999999986984369728999995670777668999999987677----4-5763--------


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf             999999999977992899981638987
Q gi|254780810|r  248 MVIAKAKCLVEYGLDVVILLDSITRLC  274 (423)
Q Consensus       248 ~a~~~a~~~~e~G~dVll~~DslTR~A  274 (423)
T Consensus        68 --~~~~~~~~~~~~k~L~ilDGlDE~~   92 (165)
T pfam05729        68 --SEVWAVILELPERVLLILDGLDELA   92 (165)
T ss_pred             --HHHHHHHHHCCCCEEEEECCHHHHC
T ss_conf             --7899999839772899964845514