>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.

Probab=98.14 E-value=3.4e-05 Score=53.29 Aligned_cols=186 Identities=22% Similarity=0.220 Sum_probs=103.2 Q ss_pred CHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---------C Q ss_conf 136888998865--51023122204877878999999999986118864699995087878999999840---------3 Q gi|254780810|r 159 DISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---------Q 227 (423) Q Consensus 159 ~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---------~ 227 (423) T Consensus 2 ~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge-~~lYis~ee~~~~l~~~~~~~g~~~~~~~~~ 80 (231) T pfam06745 2 KTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGE-PGVYVTLEEPPEDLRENAKSFGWDLEKLEEE 80 (231) T ss_pred CCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEEEECCCHHHHHHHHHHCCCCHHHHHHC T ss_conf 889556886316998299699998589725999999999999986589-6899981379999999999829985898646 Q ss_pred C--EEEECCCCCCH----HHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCH Q ss_conf 4--27823667888----89999999999999999977992899981638987762001366777677752024665046 Q gi|254780810|r 228 G--EVISSTFDESA----ARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPK 301 (423) Q Consensus 228 ~--~vv~st~d~~~----~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~ 301 (423) T Consensus 81 g~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~vVIDsit~l~~~~~~--------------~~~r~~l~ 145 (231) T pfam06745 81 GKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAK-RVVIDSITTLFYLLKP--------------AMAREILR 145 (231) T ss_pred CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHCCCH--------------HHHHHHHH T ss_conf 96789862544222100112279999999999999971998-8999764164005889--------------99999999 Q ss_pred HHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH-HCCCCEEEEEHHHHHCCCCCCCCCCCC Q ss_conf 87522577777785001211201267655413889885-226607898087884799974053354 Q gi|254780810|r 302 RFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFK-GTGNSEIVLERKIADKRIFPAMDIIKS 366 (423) Q Consensus 302 ~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~-~~~d~~i~L~r~la~~~~~PAId~~~S 366 (423) T Consensus 146 ~l~~~l---k~-~g~t~l~t~e~~~~~~--~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K~ 205 (231) T pfam06745 146 RLKRVL---KK-LGVTAIFTSEKPSGEG--GIGGYGVEEFVVDGVIRLDLKEIEGELVRTIEIVKM 205 (231) T ss_pred HHHHHH---HH-CCCEEEEEEEECCCCC--CCCCCCHHHHEEEEEEEEEEECCCCEEEEEEEEEEC T ss_conf 999999---97-6991999982125777--656763011100369999988249989999999986

HHsearch alignment for GI: 254780810 and conserved domain: pfam06745