HHsearch alignment for GI: 254780810 and conserved domain: pfam07497
>pfam07497 Rho_RNA_bind Rho termination factor, RNA-binding domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers.
Probab=99.84 E-value=1.6e-21 Score=160.79 Aligned_cols=78 Identities=76% Similarity=1.300 Sum_probs=75.5
Q ss_pred EEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHH
Q ss_conf 899999854047702675045486666556046010000122125987999886246888763000222255688788
Q gi|254780810|r 52 IIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPER 129 (423)
Q Consensus 52 ~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~ 129 (423)
T Consensus 1 i~~eGiLei~~dGyGFLR~~~~~y~~~~~DvyVs~~~Irrf~LR~GD~V~G~vR~p~~~ek~~aL~~V~~VNG~~PEe 78 (78)
T pfam07497 1 IFGEGVLEILPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFNLRTGDTIEGKIRPPKEGERYFALLKVETINGEPPEK 78 (78)
T ss_pred CCEEEEEEECCCCCEEEECCCCCCCCCCCCEEECHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 914799998589837947786587999888788999998719988889999987999898752106897588908797